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The map label for this gene is hofQ [C]

Identifier: 87199101

GI number: 87199101

Start: 1122781

End: 1124400

Strand: Reverse

Name: hofQ [C]

Synonym: Saro_1079

Alternate gene names: 87199101

Gene position: 1124400-1122781 (Counterclockwise)

Preceding gene: 87199102

Following gene: 87199100

Centisome position: 31.57

GC content: 65.99

Gene sequence:

>1620_bases
ATGAAGCCCGCGCGACAGAACCAGATTGCGAAGGTCCGCACGATGAACCGCCGAATCTCCACTTCGCTCCTCACGGCCGC
CGCGCTCGCGCTGCCGCTGGCCCTGGTCCCGGCAGGCGCCCCGCTCCATGCCCAGGGCATGACCAGCCCGGCGCGCACGG
TGACCATCTCCATCGGTCGCGGCGAACTGGTCACGGTTCCGGGCCGCATGGCCGACGTCTTCGTGGCCGACGAGAGGGTC
GCCGACGTCCAGGTCAAGTCGACCAACCAGCTCTATGTCTTCGGCAAGGCCGGCGGCGAGACGACGATCTATGCAAGCAA
CGCCAAGGGCGATGTCGTGTGGTCGGCCAATGTGCGGGTGGGCAACAACCTCGACTCGATCGACCAGATGCTGCACCTCG
CCATGCCCGAAGCGCGCATCAACGTGGCGACGATGAACAACACGGTCCTGCTCACCGGCACCGTGGCAGCGCCCGAGGAT
GCCGCCGAGGCCGAACGCCTGGTCAAGGCTTTCGTCGGCGAGAAGACCAACGTCATCAGCCGCCTCAAGATGGCAACTCC
GCTCCAGGTCAGCCTGCACGTGAAGTTCGCCGAGGTGAGCCGTTCGCTGGTGCGCACGCTGGGCGTCAACCTCACCACGA
TCGACGGCACCGGAGGCATCAAGTTCGGCATCGGCCAGGGCAGCACGACCGGCTCCGTGGCGACCAACCGCAACCTGCCG
TTTGGCGTCGGCACCAGCTCGACCTCGGGCTACATCCTCGACCCGACCGGTGCCACGTCCAACTACGTGTCCGCGACTGG
AACGTCGGTCGCTGCTAGCAGCAGCGGCACGACCATTGCGGGCATGGGCAAGCTGCTGGGCCTCGACCTTCTCGCCGCGC
TCGATGCCGGTGAGACAATCGGTCTGGTGACCACGCTGTCGGAACCGAACCTGACTGCCATTTCCGGCGAAACTGCCGAA
TTCCTGGCGGGTGGCGAATACCCGATACCGGTTTCGCAGGGTCTCGGCACGACGTCGATCGAGTACAAGAAGTACGGCGT
GAGCCTGGCCTACACGCCGACCGTGCTGGCCAACGGCCGCATCTCGATCCGCGTGCGTCCCGAAGCCTCGGAGCTATCCA
GCACCGGGGCACTCAAGCTCGACAGCGTCGAGATTCCCGCGCTGACCGTTCGCCGCGCCGAAACCACGGTGGAACTCGGT
TCGGGACAATCGTTCATGATCGCCGGCCTGCTTCAGAACGGTGCGCAGAACGCACTGACCAAGATGCCTGGCGCGGGCGA
CATCCCGATCCTTGGCTCGCTCTTCCGCTCGACCAGCTACAAGAAGGGCGAGACCGAACTGGTGATCGTGGTCACCCCCT
ACCTGGTGAATCCGGTCAACGCGAACGACATCAAGCTGCCGACCGACGGCTTCCAGAGCCCGAACGAAATCCAGCGCCTG
CTCGGCCACATGGAAAGCGACGGCGTAACCGGCGGCGACCGGCCCAAGCCGACGCAGAAGGAAGGCACGACTCAGCAGGG
CCCCAAGGTGGGCGAACTCGACGTGCCCACCACGCCGGCCGACCGCAAGAAGGTCGCCGCCGCGCCTGCCGCCGCCGAAC
CCGGCTTCAGCATCCAGTGA

Upstream 100 bases:

>100_bases
CCGCAAATGGCCTCCAACGCTGCCCCCGTTCGCCGCGGCCCGGTCGTCCGTGTGACCCGCGGCAAGGAAACAGAATCCGT
CTCGCTGGGAGGGAACTGAC

Downstream 100 bases:

>100_bases
GAAAGGGACAAGCCATGCGCCACAGCCTCATCCGCGGCACCGCAAGTGCCTTCGTCCTCTCGCTCGGCATCGCCCTCTCG
GCCTGCTCGTCGGTGCCGGA

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MKPARQNQIAKVRTMNRRISTSLLTAAALALPLALVPAGAPLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERV
ADVQVKSTNQLYVFGKAGGETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPED
AAEAERLVKAFVGEKTNVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIKFGIGQGSTTGSVATNRNLP
FGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAE
FLAGGEYPIPVSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELG
SGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVNANDIKLPTDGFQSPNEIQRL
LGHMESDGVTGGDRPKPTQKEGTTQQGPKVGELDVPTTPADRKKVAAAPAAAEPGFSIQ

Sequences:

>Translated_539_residues
MKPARQNQIAKVRTMNRRISTSLLTAAALALPLALVPAGAPLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERV
ADVQVKSTNQLYVFGKAGGETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPED
AAEAERLVKAFVGEKTNVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIKFGIGQGSTTGSVATNRNLP
FGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAE
FLAGGEYPIPVSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELG
SGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVNANDIKLPTDGFQSPNEIQRL
LGHMESDGVTGGDRPKPTQKEGTTQQGPKVGELDVPTTPADRKKVAAAPAAAEPGFSIQ
>Mature_539_residues
MKPARQNQIAKVRTMNRRISTSLLTAAALALPLALVPAGAPLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERV
ADVQVKSTNQLYVFGKAGGETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPED
AAEAERLVKAFVGEKTNVISRLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIKFGIGQGSTTGSVATNRNLP
FGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAE
FLAGGEYPIPVSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELG
SGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVNANDIKLPTDGFQSPNEIQRL
LGHMESDGVTGGDRPKPTQKEGTTQQGPKVGELDVPTTPADRKKVAAAPAAAEPGFSIQ

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=278, Percent_Identity=28.7769784172662, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87082242, Length=158, Percent_Identity=27.2151898734177, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 55910; Mature: 55910

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPARQNQIAKVRTMNRRISTSLLTAAALALPLALVPAGAPLHAQGMTSPARTVTISIGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCEEEEEEECC
GELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASNAKGDVVWSANVRV
CCEEECCCCEEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECEEE
GNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERLVKAFVGEKTNVIS
CCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
RLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIKFGIGQGSTTGSVATNRNLP
HHHCCCCEEEEEEEEHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCCEEECCCCC
FGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAGMGKLLGLDLLAALDAGETI
EECCCCCCCCEEECCCCCCCCCEECCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCEE
GLVTTLSEPNLTAISGETAEFLAGGEYPIPVSQGLGTTSIEYKKYGVSLAYTPTVLANGR
EEEEEECCCCEEEECCCCHHHHCCCCCCCCHHCCCCCCEEEEHHHCEEEEECCEEEECCE
ISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELGSGQSFMIAGLLQNGAQNALT
EEEEECCCHHHHCCCCCEEECCEECCEEEEEECCEEEEECCCCEEEEHHHHHCCHHHHHH
KMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVNANDIKLPTDGFQSPNEIQRL
HCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEECCCCCCCEECCCCCCCCHHHHHHH
LGHMESDGVTGGDRPKPTQKEGTTQQGPKVGELDVPTTPADRKKVAAAPAAAEPGFSIQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCC
>Mature Secondary Structure
MKPARQNQIAKVRTMNRRISTSLLTAAALALPLALVPAGAPLHAQGMTSPARTVTISIGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCEEEEEEECC
GELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGGETTIYASNAKGDVVWSANVRV
CCEEECCCCEEEEEEECCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEECEEE
GNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPEDAAEAERLVKAFVGEKTNVIS
CCCHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHH
RLKMATPLQVSLHVKFAEVSRSLVRTLGVNLTTIDGTGGIKFGIGQGSTTGSVATNRNLP
HHHCCCCEEEEEEEEHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCCEEECCCCC
FGVGTSSTSGYILDPTGATSNYVSATGTSVAASSSGTTIAGMGKLLGLDLLAALDAGETI
EECCCCCCCCEEECCCCCCCCCEECCCCEEEECCCCCEEEHHHHHHHHHHHHHHCCCCEE
GLVTTLSEPNLTAISGETAEFLAGGEYPIPVSQGLGTTSIEYKKYGVSLAYTPTVLANGR
EEEEEECCCCEEEECCCCHHHHCCCCCCCCHHCCCCCCEEEEHHHCEEEEECCEEEECCE
ISIRVRPEASELSSTGALKLDSVEIPALTVRRAETTVELGSGQSFMIAGLLQNGAQNALT
EEEEECCCHHHHCCCCCEEECCEECCEEEEEECCEEEEECCCCEEEEHHHHHCCHHHHHH
KMPGAGDIPILGSLFRSTSYKKGETELVIVVTPYLVNPVNANDIKLPTDGFQSPNEIQRL
HCCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCEEECCCCCCCEECCCCCCCCHHHHHHH
LGHMESDGVTGGDRPKPTQKEGTTQQGPKVGELDVPTTPADRKKVAAAPAAAEPGFSIQ
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]