| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ygcG [H]
Identifier: 87198900
GI number: 87198900
Start: 932898
End: 933737
Strand: Reverse
Name: ygcG [H]
Synonym: Saro_0878
Alternate gene names: 87198900
Gene position: 933737-932898 (Counterclockwise)
Preceding gene: 87198901
Following gene: 87198899
Centisome position: 26.22
GC content: 69.52
Gene sequence:
>840_bases GTGGTCCGCCCCCTGCGGGCCTTCTGGCAGGCAGTCGCGCTGCTGTTGCTCGCGTTGGCGGGCACGGCAGCCCACGCGGC CATGCCGGCACGCCCCGCCGGACCGGTACTGGACGAGGCGCAGGTCATTCCCGATGCGGAAGAAGCCGCGATCGCCCAGC GCCTCGCGGCCTACAACGCCCAGTCCGGGCGAGCCGTGGTGGTCGCAACGGTCGCCTCGCTCGATGGGCAGGACGTCGAG ACTTACGCCAACACCCTGTTCCGCGCCTGGGGCATTGGCGGCAAGCAGACCGACCAGGGACTGCTGCTCCTGATCGCTCC CAATGACCGCAAAGTGCGCATCGAAGTCGGCTACGGCCTCGAGGAATACATGCCCGATGTCCTGGCCGGACGCATCCTCT CGGGCTCGGTCACTCCGCGCTTCAAGGCAGGCGACTACGTCGGCGGCATCAACGCCGGGATCGACCAGATCCTTGCCCAG TTGAGCCGCACTCCCGCAGACGCCAAAGCCGTTGCCGAGGCTGCGGCGGCACGGCAGCAGAGCGACGGCGCGCAAGGCGG CGGAGGGTTCTTCGGAAGCGCGCTGTTCTGGATCGTCGTGATCGTGGTCTTCATCGGCATGTTCGGCGGTCGTGGCCGGC GCGGTTATGTCCAGCGCCGCAGCGGCATTGACCCCGGCATCGTTCTGTGGGGCATCAGTGAAATGGCCCGCGCCGCCTCG AACAATCGCCATTCCGGCGGCTGGGGCGGAGGCGGTGGTTCCGACTGGGGCGGCGGCGGAGGCTTCGGCGGCTTCGGCGG CGGCGATTCCGGTGGCGGCGGCGCTTCGGGGGACTGGTGA
Upstream 100 bases:
>100_bases AAGCCGATGGTGCCGTTCAAGGCCAACGCCGGGTCCGACGTGGCGCCCACGGTCAACTTCGACATGAACGCGCCTGCTCC CGCCGCCTCGGGCAAGTAAG
Downstream 100 bases:
>100_bases TGACGCTGGTGATGACAAGGCTTACTCCGATGACCGAGGCCGATCACAAGCTCGTCTCCGATGCCGTGGCAGCAGCCGAA GCGCACAGCGCGGGCGAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MVRPLRAFWQAVALLLLALAGTAAHAAMPARPAGPVLDEAQVIPDAEEAAIAQRLAAYNAQSGRAVVVATVASLDGQDVE TYANTLFRAWGIGGKQTDQGLLLLIAPNDRKVRIEVGYGLEEYMPDVLAGRILSGSVTPRFKAGDYVGGINAGIDQILAQ LSRTPADAKAVAEAAAARQQSDGAQGGGGFFGSALFWIVVIVVFIGMFGGRGRRGYVQRRSGIDPGIVLWGISEMARAAS NNRHSGGWGGGGGSDWGGGGGFGGFGGGDSGGGGASGDW
Sequences:
>Translated_279_residues MVRPLRAFWQAVALLLLALAGTAAHAAMPARPAGPVLDEAQVIPDAEEAAIAQRLAAYNAQSGRAVVVATVASLDGQDVE TYANTLFRAWGIGGKQTDQGLLLLIAPNDRKVRIEVGYGLEEYMPDVLAGRILSGSVTPRFKAGDYVGGINAGIDQILAQ LSRTPADAKAVAEAAAARQQSDGAQGGGGFFGSALFWIVVIVVFIGMFGGRGRRGYVQRRSGIDPGIVLWGISEMARAAS NNRHSGGWGGGGGSDWGGGGGFGGFGGGDSGGGGASGDW >Mature_279_residues MVRPLRAFWQAVALLLLALAGTAAHAAMPARPAGPVLDEAQVIPDAEEAAIAQRLAAYNAQSGRAVVVATVASLDGQDVE TYANTLFRAWGIGGKQTDQGLLLLIAPNDRKVRIEVGYGLEEYMPDVLAGRILSGSVTPRFKAGDYVGGINAGIDQILAQ LSRTPADAKAVAEAAAARQQSDGAQGGGGFFGSALFWIVVIVVFIGMFGGRGRRGYVQRRSGIDPGIVLWGISEMARAAS NNRHSGGWGGGGGSDWGGGGGFGGFGGGDSGGGGASGDW
Specific function: Unknown
COG id: COG1512
COG function: function code R; Beta-propeller domains of methanol dehydrogenase type
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0603 family [H]
Homologues:
Organism=Escherichia coli, GI87082161, Length=215, Percent_Identity=23.7209302325581, Blast_Score=79, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007621 [H]
Pfam domain/function: PF04536 DUF477 [H]
EC number: NA
Molecular weight: Translated: 28498; Mature: 28498
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRPLRAFWQAVALLLLALAGTAAHAAMPARPAGPVLDEAQVIPDAEEAAIAQRLAAYNA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCC QSGRAVVVATVASLDGQDVETYANTLFRAWGIGGKQTDQGLLLLIAPNDRKVRIEVGYGL CCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCH EEYMPDVLAGRILSGSVTPRFKAGDYVGGINAGIDQILAQLSRTPADAKAVAEAAAARQQ HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SDGAQGGGGFFGSALFWIVVIVVFIGMFGGRGRRGYVQRRSGIDPGIVLWGISEMARAAS CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEECHHHHHHHHC NNRHSGGWGGGGGSDWGGGGGFGGFGGGDSGGGGASGDW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVRPLRAFWQAVALLLLALAGTAAHAAMPARPAGPVLDEAQVIPDAEEAAIAQRLAAYNA CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCC QSGRAVVVATVASLDGQDVETYANTLFRAWGIGGKQTDQGLLLLIAPNDRKVRIEVGYGL CCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEECCCH EEYMPDVLAGRILSGSVTPRFKAGDYVGGINAGIDQILAQLSRTPADAKAVAEAAAARQQ HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SDGAQGGGGFFGSALFWIVVIVVFIGMFGGRGRRGYVQRRSGIDPGIVLWGISEMARAAS CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCEEEECHHHHHHHHC NNRHSGGWGGGGGSDWGGGGGFGGFGGGDSGGGGASGDW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]