Click here to switch to the map view.

The map label for this gene is lemA [H]

Identifier: 87198901

GI number: 87198901

Start: 933739

End: 934365

Strand: Reverse

Name: lemA [H]

Synonym: Saro_0879

Alternate gene names: 87198901

Gene position: 934365-933739 (Counterclockwise)

Preceding gene: 87198903

Following gene: 87198900

Centisome position: 26.23

GC content: 66.51

Gene sequence:

>627_bases
ATGGCCGCCACCCGCTTCACCCAGATCGCGTTCGCCACCGTTGCCGCAGCCAGCCTTTCGGCCTGCGGGATCAACTCGGT
TCCAACCGCGGAGGAAGAGGCAAAGGCCCGCTGGGCCGACGTCGAGAGCGCCTATCAGCGCCGCGCGGACCTCGTGCCGA
ACCTGGTCGCCACGGCCAAGGGCGCCGCGGCATCCGAAACCCAGATCCTGACCAACGTGACCGACGCCCGCGCCCGCGCG
ACGTCGATCAACATCACGACCGACGATCTGTCGAACCCGGCAGAGTTCGAGAAATTCCAGAACGCGCAGAACCAGCTCAC
GCAGGCGCTGGGCCAGTTGCGCACCGTGGTCGAGAACTACCCGCAGTTGCAGAGCCAGGCGCGCTTCGCCGATCTCATGG
TCCAGCTCGAAGGCACCGAGAACCGCATCAACGTGGCACGCACGCGCTACAACGAGGCGGTGCAGGCCTATAACACCACC
ATCCGCACCTTCCCCGACGCGATCGGCGCGAAGCTGATACACGGCGCGAAGCCGATGGTGCCGTTCAAGGCCAACGCCGG
GTCCGACGTGGCGCCCACGGTCAACTTCGACATGAACGCGCCTGCTCCCGCCGCCTCGGGCAAGTAA

Upstream 100 bases:

>100_bases
TTGCGCCATGGACGAACCCTTGAACCGGGACCAGCCAGCGCTATGTCATTGCCCATGCCGGACCGCTCCCTTGCGGTCCC
ACAAAGGGGATTTGACGTCG

Downstream 100 bases:

>100_bases
GGTGGTCCGCCCCCTGCGGGCCTTCTGGCAGGCAGTCGCGCTGCTGTTGCTCGCGTTGGCGGGCACGGCAGCCCACGCGG
CCATGCCGGCACGCCCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MAATRFTQIAFATVAAASLSACGINSVPTAEEEAKARWADVESAYQRRADLVPNLVATAKGAAASETQILTNVTDARARA
TSINITTDDLSNPAEFEKFQNAQNQLTQALGQLRTVVENYPQLQSQARFADLMVQLEGTENRINVARTRYNEAVQAYNTT
IRTFPDAIGAKLIHGAKPMVPFKANAGSDVAPTVNFDMNAPAPAASGK

Sequences:

>Translated_208_residues
MAATRFTQIAFATVAAASLSACGINSVPTAEEEAKARWADVESAYQRRADLVPNLVATAKGAAASETQILTNVTDARARA
TSINITTDDLSNPAEFEKFQNAQNQLTQALGQLRTVVENYPQLQSQARFADLMVQLEGTENRINVARTRYNEAVQAYNTT
IRTFPDAIGAKLIHGAKPMVPFKANAGSDVAPTVNFDMNAPAPAASGK
>Mature_207_residues
AATRFTQIAFATVAAASLSACGINSVPTAEEEAKARWADVESAYQRRADLVPNLVATAKGAAASETQILTNVTDARARAT
SINITTDDLSNPAEFEKFQNAQNQLTQALGQLRTVVENYPQLQSQARFADLMVQLEGTENRINVARTRYNEAVQAYNTTI
RTFPDAIGAKLIHGAKPMVPFKANAGSDVAPTVNFDMNAPAPAASGK

Specific function: Unknown

COG id: COG1704

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LemA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007156 [H]

Pfam domain/function: PF04011 LemA [H]

EC number: NA

Molecular weight: Translated: 22231; Mature: 22100

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATRFTQIAFATVAAASLSACGINSVPTAEEEAKARWADVESAYQRRADLVPNLVATAK
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAAASETQILTNVTDARARATSINITTDDLSNPAEFEKFQNAQNQLTQALGQLRTVVENY
CCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQLQSQARFADLMVQLEGTENRINVARTRYNEAVQAYNTTIRTFPDAIGAKLIHGAKPMV
HHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PFKANAGSDVAPTVNFDMNAPAPAASGK
EEECCCCCCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
AATRFTQIAFATVAAASLSACGINSVPTAEEEAKARWADVESAYQRRADLVPNLVATAK
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAAASETQILTNVTDARARATSINITTDDLSNPAEFEKFQNAQNQLTQALGQLRTVVENY
CCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQLQSQARFADLMVQLEGTENRINVARTRYNEAVQAYNTTIRTFPDAIGAKLIHGAKPMV
HHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PFKANAGSDVAPTVNFDMNAPAPAASGK
EEECCCCCCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11860552 [H]