| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87198899
Identifier: 87198899
GI number: 87198899
Start: 932203
End: 932898
Strand: Reverse
Name: 87198899
Synonym: Saro_0877
Alternate gene names: NA
Gene position: 932898-932203 (Counterclockwise)
Preceding gene: 87198900
Following gene: 87198898
Centisome position: 26.19
GC content: 66.81
Gene sequence:
>696_bases ATGACGCTGGTGATGACAAGGCTTACTCCGATGACCGAGGCCGATCACAAGCTCGTCTCCGATGCCGTGGCAGCAGCCGA AGCGCACAGCGCGGGCGAGATCGTCACCATCGTCACGCCGCGTTCCGATGGCTACCGCGACATCGCGCTCGCCTGGTCGG CGCTTGTCGCCTTTCTTGCGCTCGCCGCACTCGAGATCGCCCCCGGCTTCTACCTTGCGCTGGTGGAGCGCCTTCTTGGC CTGTGGGCGCACGAATGGACCCCGCGCGCGGTGCTCGGCCTCGCGCTCGCCGTCGCGGCACTAAAGTTCGGAGGGACATG GCTGATCCTGCGGTTCACGCCGCTGGGGTTGTGGCTCACCCCCCGCCGCATCCGCAACGCCCGCGTGCGCGACCGCGCGC TCACCTGCTTTCGCGTCGGCGCGGAAAGCCGCACTTCGGGCCGCACCGGCGTGCTGATATACCTCAGCCTTGCCGAACAT CGTGCCGAGATCATTGCCGACGCCGCCATCGCATCGAAGGTCTCGCCCGAAACCTGGGGCCACGCGATGAAGGCCATGCT AGATCCGCTGCGGCAGGGCCGCATGGCCGAAGGCATGGCCGCCGCCGTGGCCGAAGTGGGCAAGGTCCTTGCCCTGCACT TCCCCCGCGCCGAAGGTGACATCAACGAATTGCCGGACAGATTGATCGAAGTATGA
Upstream 100 bases:
>100_bases GCTGGGGCGGAGGCGGTGGTTCCGACTGGGGCGGCGGCGGAGGCTTCGGCGGCTTCGGCGGCGGCGATTCCGGTGGCGGC GGCGCTTCGGGGGACTGGTG
Downstream 100 bases:
>100_bases GCCTCGAGGAAGAATACCGCGACCATCCCGAAGTCACGCATTGGCAGGGCCGGTTCATCGTCACCAAGACCCGCGGACGC TGGGAATACGTCTCGCGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 231; Mature: 230
Protein sequence:
>231_residues MTLVMTRLTPMTEADHKLVSDAVAAAEAHSAGEIVTIVTPRSDGYRDIALAWSALVAFLALAALEIAPGFYLALVERLLG LWAHEWTPRAVLGLALAVAALKFGGTWLILRFTPLGLWLTPRRIRNARVRDRALTCFRVGAESRTSGRTGVLIYLSLAEH RAEIIADAAIASKVSPETWGHAMKAMLDPLRQGRMAEGMAAAVAEVGKVLALHFPRAEGDINELPDRLIEV
Sequences:
>Translated_231_residues MTLVMTRLTPMTEADHKLVSDAVAAAEAHSAGEIVTIVTPRSDGYRDIALAWSALVAFLALAALEIAPGFYLALVERLLG LWAHEWTPRAVLGLALAVAALKFGGTWLILRFTPLGLWLTPRRIRNARVRDRALTCFRVGAESRTSGRTGVLIYLSLAEH RAEIIADAAIASKVSPETWGHAMKAMLDPLRQGRMAEGMAAAVAEVGKVLALHFPRAEGDINELPDRLIEV >Mature_230_residues TLVMTRLTPMTEADHKLVSDAVAAAEAHSAGEIVTIVTPRSDGYRDIALAWSALVAFLALAALEIAPGFYLALVERLLGL WAHEWTPRAVLGLALAVAALKFGGTWLILRFTPLGLWLTPRRIRNARVRDRALTCFRVGAESRTSGRTGVLIYLSLAEHR AEIIADAAIASKVSPETWGHAMKAMLDPLRQGRMAEGMAAAVAEVGKVLALHFPRAEGDINELPDRLIEV
Specific function: Unknown
COG id: COG3762
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25037; Mature: 24905
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLVMTRLTPMTEADHKLVSDAVAAAEAHSAGEIVTIVTPRSDGYRDIALAWSALVAFLA CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH LAALEIAPGFYLALVERLLGLWAHEWTPRAVLGLALAVAALKFGGTWLILRFTPLGLWLT HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEC PRRIRNARVRDRALTCFRVGAESRTSGRTGVLIYLSLAEHRAEIIADAAIASKVSPETWG HHHHHCCHHHHHHHHHHEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHH HAMKAMLDPLRQGRMAEGMAAAVAEVGKVLALHFPRAEGDINELPDRLIEV HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure TLVMTRLTPMTEADHKLVSDAVAAAEAHSAGEIVTIVTPRSDGYRDIALAWSALVAFLA EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH LAALEIAPGFYLALVERLLGLWAHEWTPRAVLGLALAVAALKFGGTWLILRFTPLGLWLT HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEC PRRIRNARVRDRALTCFRVGAESRTSGRTGVLIYLSLAEHRAEIIADAAIASKVSPETWG HHHHHCCHHHHHHHHHHEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHH HAMKAMLDPLRQGRMAEGMAAAVAEVGKVLALHFPRAEGDINELPDRLIEV HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA