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The map label for this gene is yibD [C]

Identifier: 87198748

GI number: 87198748

Start: 763254

End: 765296

Strand: Reverse

Name: yibD [C]

Synonym: Saro_0724

Alternate gene names: 87198748

Gene position: 765296-763254 (Counterclockwise)

Preceding gene: 87198749

Following gene: 87198747

Centisome position: 21.49

GC content: 64.27

Gene sequence:

>2043_bases
ATGGATCAGGCGCACGCGAATGCCGCCAGTCTGGAAGCCAGCGATCTGTTCGACGCCGATTGGTATCTTGCCGAATACCC
CGACGTGCAAAGCCTGCAGATGCCGCCAGCGGTCCACTACCTGTGGCTGGGAGCGCGGCTTGGCCGCAACCCGTCTCCGC
GCTTCAGTACGCGCAGCTACCTTGATGCTAATCCGGATGTCGCGCAGGCCGGCATCAATCCGCTGCTTCACTTCCTCCTG
GCAGGACGCGACGAAGGGCGGTCAGGCACGATACTCGCCGCGCCGTCCAGAGGTTCGACAGAGACCGACGTCAACGCCAG
CACCTTTGGCGAACATCGGCCCTATGTTTTCCTCCCGCCCGCCGATCTCGATCGCATCGCAGCGCAATGGTCGAAGGACA
GCGCGCGTCCCGACGCCCAGGGCCGGGGCATCGCCATCTTCAGTGCGATCACTGGCAGTTACGACAGCATCAACCACCAC
GAGCACCTGATTCCCGGGGCGGACTACCTGCTGTTCAGCGACGCGCCCAAGCCTCGGTATGTGTACCAACCGCGACAGGC
CCCCTGGTTCGATTGCGACACCGTCCGGGCGGCACGCTTCATCAAGACGCACCCACACATGCTGCTGGGCGGCTATCGCA
TCGCCGTGTGGATCGATGGCAACATCCTGATCAGGGGAGATCTCCTTCCGCTCGTTCAGCGTTTCGAGGAGTCCGGGCTC
GCGTTCGGAGCGGTGCCGCACCCGTTGCGCCAATCGGTCTACGCCGAAGCGGTCGAGTGCATGAAACGCGGCAAGGATGA
CGAAGCGACGATCCGCCGCCAGATGCAGCGTTACCGCCGCGAAGAATTCGACTGCGAGGACCTGATCGAGAGCAATCTCC
TGATGTTCCGGCTCGGCCACCCATCACTCGCACCGCTGCTCGATACCTGGTGGGCGCAGATCGAGAGTGGATCGCGCCGG
GATCAGTTGTCTCTGAACTATGCCCTGCACAAGACAGGCGTCGAGTGGCTCGCGCTGACCCAGCGCCCGCACAGCGTCCG
CGACCACCCGGCGCTCGCCTTGATGCATCACCGGTCCCAGTTCAATCCGGCCGAGCCTGGCGTCTGCCTCCCTCGCCCGC
GGGAACGGACGTTCGCCGAAGTGCGCGCGGAGCGGATCGCTGCACAATCGGCGCGCCGGGCCGATGTCATCGTCTGCGTG
CACAACGCTCCCGAGATGGTGGCACGCTGCCTTGATTCCGTGCGCACCGGCCAGAACCCCGACCGTCATCGCATCATAAT
AATCGACGACGGTTCAGGCCGGGACACCGCGGAACTCGTTTCGCGCTTTGCGGCGGATACCCCGAACACCGTGCTGATCC
GCAACGCTGTGGCGGGAGGCTACACCCGTGCCGCCAACCAGGGCCTGAAAGCCATGGATGCCGACATGGCAATCCTTTTG
AACAGCGATACCGTGGTGGCACCCGGCTGGATCGAAAAGCTGCTCGACGCCGCGTTCTCCAATCCGGGCGTCGGTATTGT
CGGTCCGATGTCCAGTGCCGCAAGTCATCAATCCATTCCCGAACACCAGAGCCGGCACGACCAGACGGCGATCAACGATT
TGCCGCCCGGTTGGTCCGCCGCCGACATGGACGCCTGGTGCGAACGCATGGCGCCCGCCGACTTCCTGCCCCGGGTTCCG
CTCGTGCACGGGTTCTGCTTCGCCGTAACCCGAGAAGCCGTTGAGCGGATTGGATACCTCGACGAAGACAGCTTTCCGGA
CGGGTACGGCGAGGAAAACGACTACTGCTTGCGCGCCACCGACGCCGGTGTCGGGCTGGCAATCGCCACGCACACGTACG
TCTTCCACGAGAAGTCGCAGAGCTACCAAAGCGATCGCCGGATATCCCTCATGAAGAGAGGCAACGGAAAGATCCGCGAG
TTGCACGGCGACGAGCGTGTCGCTCGCGCGGTTCGCTCCATGCAGCAGAACCCGCACCTGGGCCGCCTGCGCACTGCCGC
GGCCCGCCTGTTCGCCGTCACCACACCGGAGACACCTGCATGA

Upstream 100 bases:

>100_bases
TGATACATGGTCTGAAGGAAGGACGCCTGTTCGGCTCGAGCGCAACGGGAGACGGACATTGACGGAAGCGGCGTCACCTC
TCGATCAGGGGCTTTTGGCC

Downstream 100 bases:

>100_bases
ACGAATTCGCAGACCTGTTCCTGCCTGATGCCGAAGGCGCCACTTCGCCGGACTACTATGACTTCGGCTGCAGTTCAGGC
GGGAACCTGGCGTTCATCGC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Glycosyltransferase; Glycosyl Transferase; Family 2 Glycosyl Transferase; Glycosyl Transferase Group 2 Family Protein; Methyltransferase FkbM Family; Glycosyl Transferase Group 2 Family; Glycosyl Transferase GT2 Family Protein; Beta Strand Repeat-Containing Protein; Amidase-Related Protein; Bifunctional SAM-Dependent Methyltransferase Type; Rhamnan Synthesis F; Autotransporter-Associated Beta Strand Repeat Protein; Eps11P Family Protein; Lipopolysaccharide Biosynthesis Protein; Glycosyl Transferase Group 1 Family Protein; DMSO Reductase; Animal Heme Peroxidase; FkbM Family Methyltransferase; DTDP-Rhamnosyl Transferase RfbF

Number of amino acids: Translated: 680; Mature: 680

Protein sequence:

>680_residues
MDQAHANAASLEASDLFDADWYLAEYPDVQSLQMPPAVHYLWLGARLGRNPSPRFSTRSYLDANPDVAQAGINPLLHFLL
AGRDEGRSGTILAAPSRGSTETDVNASTFGEHRPYVFLPPADLDRIAAQWSKDSARPDAQGRGIAIFSAITGSYDSINHH
EHLIPGADYLLFSDAPKPRYVYQPRQAPWFDCDTVRAARFIKTHPHMLLGGYRIAVWIDGNILIRGDLLPLVQRFEESGL
AFGAVPHPLRQSVYAEAVECMKRGKDDEATIRRQMQRYRREEFDCEDLIESNLLMFRLGHPSLAPLLDTWWAQIESGSRR
DQLSLNYALHKTGVEWLALTQRPHSVRDHPALALMHHRSQFNPAEPGVCLPRPRERTFAEVRAERIAAQSARRADVIVCV
HNAPEMVARCLDSVRTGQNPDRHRIIIIDDGSGRDTAELVSRFAADTPNTVLIRNAVAGGYTRAANQGLKAMDADMAILL
NSDTVVAPGWIEKLLDAAFSNPGVGIVGPMSSAASHQSIPEHQSRHDQTAINDLPPGWSAADMDAWCERMAPADFLPRVP
LVHGFCFAVTREAVERIGYLDEDSFPDGYGEENDYCLRATDAGVGLAIATHTYVFHEKSQSYQSDRRISLMKRGNGKIRE
LHGDERVARAVRSMQQNPHLGRLRTAAARLFAVTTPETPA

Sequences:

>Translated_680_residues
MDQAHANAASLEASDLFDADWYLAEYPDVQSLQMPPAVHYLWLGARLGRNPSPRFSTRSYLDANPDVAQAGINPLLHFLL
AGRDEGRSGTILAAPSRGSTETDVNASTFGEHRPYVFLPPADLDRIAAQWSKDSARPDAQGRGIAIFSAITGSYDSINHH
EHLIPGADYLLFSDAPKPRYVYQPRQAPWFDCDTVRAARFIKTHPHMLLGGYRIAVWIDGNILIRGDLLPLVQRFEESGL
AFGAVPHPLRQSVYAEAVECMKRGKDDEATIRRQMQRYRREEFDCEDLIESNLLMFRLGHPSLAPLLDTWWAQIESGSRR
DQLSLNYALHKTGVEWLALTQRPHSVRDHPALALMHHRSQFNPAEPGVCLPRPRERTFAEVRAERIAAQSARRADVIVCV
HNAPEMVARCLDSVRTGQNPDRHRIIIIDDGSGRDTAELVSRFAADTPNTVLIRNAVAGGYTRAANQGLKAMDADMAILL
NSDTVVAPGWIEKLLDAAFSNPGVGIVGPMSSAASHQSIPEHQSRHDQTAINDLPPGWSAADMDAWCERMAPADFLPRVP
LVHGFCFAVTREAVERIGYLDEDSFPDGYGEENDYCLRATDAGVGLAIATHTYVFHEKSQSYQSDRRISLMKRGNGKIRE
LHGDERVARAVRSMQQNPHLGRLRTAAARLFAVTTPETPA
>Mature_680_residues
MDQAHANAASLEASDLFDADWYLAEYPDVQSLQMPPAVHYLWLGARLGRNPSPRFSTRSYLDANPDVAQAGINPLLHFLL
AGRDEGRSGTILAAPSRGSTETDVNASTFGEHRPYVFLPPADLDRIAAQWSKDSARPDAQGRGIAIFSAITGSYDSINHH
EHLIPGADYLLFSDAPKPRYVYQPRQAPWFDCDTVRAARFIKTHPHMLLGGYRIAVWIDGNILIRGDLLPLVQRFEESGL
AFGAVPHPLRQSVYAEAVECMKRGKDDEATIRRQMQRYRREEFDCEDLIESNLLMFRLGHPSLAPLLDTWWAQIESGSRR
DQLSLNYALHKTGVEWLALTQRPHSVRDHPALALMHHRSQFNPAEPGVCLPRPRERTFAEVRAERIAAQSARRADVIVCV
HNAPEMVARCLDSVRTGQNPDRHRIIIIDDGSGRDTAELVSRFAADTPNTVLIRNAVAGGYTRAANQGLKAMDADMAILL
NSDTVVAPGWIEKLLDAAFSNPGVGIVGPMSSAASHQSIPEHQSRHDQTAINDLPPGWSAADMDAWCERMAPADFLPRVP
LVHGFCFAVTREAVERIGYLDEDSFPDGYGEENDYCLRATDAGVGLAIATHTYVFHEKSQSYQSDRRISLMKRGNGKIRE
LHGDERVARAVRSMQQNPHLGRLRTAAARLFAVTTPETPA

Specific function: Unknown

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 75543; Mature: 75543

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQAHANAASLEASDLFDADWYLAEYPDVQSLQMPPAVHYLWLGARLGRNPSPRFSTRSY
CCCCCCCHHCCCHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
LDANPDVAQAGINPLLHFLLAGRDEGRSGTILAAPSRGSTETDVNASTFGEHRPYVFLPP
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEECC
ADLDRIAAQWSKDSARPDAQGRGIAIFSAITGSYDSINHHEHLIPGADYLLFSDAPKPRY
CCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCE
VYQPRQAPWFDCDTVRAARFIKTHPHMLLGGYRIAVWIDGNILIRGDLLPLVQRFEESGL
EECCCCCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEECCCEEEECCHHHHHHHHHHCCC
AFGAVPHPLRQSVYAEAVECMKRGKDDEATIRRQMQRYRREEFDCEDLIESNLLMFRLGH
EECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECC
PSLAPLLDTWWAQIESGSRRDQLSLNYALHKTGVEWLALTQRPHSVRDHPALALMHHRSQ
CCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCC
FNPAEPGVCLPRPRERTFAEVRAERIAAQSARRADVIVCVHNAPEMVARCLDSVRTGQNP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
DRHRIIIIDDGSGRDTAELVSRFAADTPNTVLIRNAVAGGYTRAANQGLKAMDADMAILL
CCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCHHHCCCEEEEE
NSDTVVAPGWIEKLLDAAFSNPGVGIVGPMSSAASHQSIPEHQSRHDQTAINDLPPGWSA
CCCCEECCHHHHHHHHHHHCCCCCEEECCCCHHHHHCCCCCHHHHCCHHHHHCCCCCCCC
ADMDAWCERMAPADFLPRVPLVHGFCFAVTREAVERIGYLDEDSFPDGYGEENDYCLRAT
CCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DAGVGLAIATHTYVFHEKSQSYQSDRRISLMKRGNGKIRELHGDERVARAVRSMQQNPHL
CCCCEEEEEEEEEEEECCHHHHHCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHCCCCH
GRLRTAAARLFAVTTPETPA
HHHHHHHHHEEEEECCCCCC
>Mature Secondary Structure
MDQAHANAASLEASDLFDADWYLAEYPDVQSLQMPPAVHYLWLGARLGRNPSPRFSTRSY
CCCCCCCHHCCCHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
LDANPDVAQAGINPLLHFLLAGRDEGRSGTILAAPSRGSTETDVNASTFGEHRPYVFLPP
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCEEEECC
ADLDRIAAQWSKDSARPDAQGRGIAIFSAITGSYDSINHHEHLIPGADYLLFSDAPKPRY
CCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCE
VYQPRQAPWFDCDTVRAARFIKTHPHMLLGGYRIAVWIDGNILIRGDLLPLVQRFEESGL
EECCCCCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEECCCEEEECCHHHHHHHHHHCCC
AFGAVPHPLRQSVYAEAVECMKRGKDDEATIRRQMQRYRREEFDCEDLIESNLLMFRLGH
EECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECC
PSLAPLLDTWWAQIESGSRRDQLSLNYALHKTGVEWLALTQRPHSVRDHPALALMHHRSQ
CCHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHCC
FNPAEPGVCLPRPRERTFAEVRAERIAAQSARRADVIVCVHNAPEMVARCLDSVRTGQNP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCC
DRHRIIIIDDGSGRDTAELVSRFAADTPNTVLIRNAVAGGYTRAANQGLKAMDADMAILL
CCEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHCCCHHHCCCEEEEE
NSDTVVAPGWIEKLLDAAFSNPGVGIVGPMSSAASHQSIPEHQSRHDQTAINDLPPGWSA
CCCCEECCHHHHHHHHHHHCCCCCEEECCCCHHHHHCCCCCHHHHCCHHHHHCCCCCCCC
ADMDAWCERMAPADFLPRVPLVHGFCFAVTREAVERIGYLDEDSFPDGYGEENDYCLRAT
CCHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
DAGVGLAIATHTYVFHEKSQSYQSDRRISLMKRGNGKIRELHGDERVARAVRSMQQNPHL
CCCCEEEEEEEEEEEECCHHHHHCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHCCCCH
GRLRTAAARLFAVTTPETPA
HHHHHHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA