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The map label for this gene is ctrD [H]

Identifier: 87198744

GI number: 87198744

Start: 759902

End: 760549

Strand: Reverse

Name: ctrD [H]

Synonym: Saro_0720

Alternate gene names: 87198744

Gene position: 760549-759902 (Counterclockwise)

Preceding gene: 87198745

Following gene: 87198743

Centisome position: 21.35

GC content: 62.96

Gene sequence:

>648_bases
ATGATCACCTGCCAGATGATCCACAAGACGTACGCCGCCGGGCACGGAGAACGCAAGGTCCTGCGCGGGCTCGATTTCGC
CATCTCGAGAGGCGAGCATGTGGGCTTTCTCGGTCGCAACGGCGCGGGCAAGACGACGCTGATCAAACTGCTTGGCGGCG
TGGAGTTTCCGACGGCGGGCACGATCCGGCGGCGCATGACGGTGTCGTGGCCCCTCGGCTTTGGCGGCGGCTTTCAGGGC
AGCCTGACCGGCTACGATAACGCGCGCTTCATCGCCCGCATCTATGGCATGTCCTACCGCGACATCGCCGACTTCGTCGA
GGACTTCACCGAACTTGGCCGCCAGTTGCGGGCCCCGGTCAAGACCTACTCGCAAGGCATGCGCGCGCGTCTTGCCTTCG
CCCTTTCCATGGCGATCGAGTTCGACTGCTATCTTGTCGACGAAGTTATTCTCGTGGGGGACCACCGTTTCCACGAGAAA
TGCAGGCTCGAGTTGTTCGGCAAGCGGTCCGACCGAGCACTGATCCTTGCCTCGCACAACGCCGCCCTGATCCGCGAGCA
TTGCACGCGCGCCATGGTCCTGCACGATGGGCGGGGTACGATGCACGACGACATAGACCTTGCCCTTCGTCACTACGAGG
CGCTGTAA

Upstream 100 bases:

>100_bases
GGCCGCACTACAGTCCCGGCTACCCGCTGGCCGGGGCGATCGGGCTGACCTGCCTCGGGCTGGCTCTCTCACGCCGCGTA
CGCAGGACCATGGCGGTCGA

Downstream 100 bases:

>100_bases
CCGCAACTTGGACCCTGGCAAGATTTCGTCACGCGGTTCCCGCTTGAATTCGCAGGCGCGCTGGCCAAAGTTTTACGCTA
TGGGCCCCGCCTACGTATTC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Capsular-polysaccharide-transporting ATPase [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MITCQMIHKTYAAGHGERKVLRGLDFAISRGEHVGFLGRNGAGKTTLIKLLGGVEFPTAGTIRRRMTVSWPLGFGGGFQG
SLTGYDNARFIARIYGMSYRDIADFVEDFTELGRQLRAPVKTYSQGMRARLAFALSMAIEFDCYLVDEVILVGDHRFHEK
CRLELFGKRSDRALILASHNAALIREHCTRAMVLHDGRGTMHDDIDLALRHYEAL

Sequences:

>Translated_215_residues
MITCQMIHKTYAAGHGERKVLRGLDFAISRGEHVGFLGRNGAGKTTLIKLLGGVEFPTAGTIRRRMTVSWPLGFGGGFQG
SLTGYDNARFIARIYGMSYRDIADFVEDFTELGRQLRAPVKTYSQGMRARLAFALSMAIEFDCYLVDEVILVGDHRFHEK
CRLELFGKRSDRALILASHNAALIREHCTRAMVLHDGRGTMHDDIDLALRHYEAL
>Mature_215_residues
MITCQMIHKTYAAGHGERKVLRGLDFAISRGEHVGFLGRNGAGKTTLIKLLGGVEFPTAGTIRRRMTVSWPLGFGGGFQG
SLTGYDNARFIARIYGMSYRDIADFVEDFTELGRQLRAPVKTYSQGMRARLAFALSMAIEFDCYLVDEVILVGDHRFHEK
CRLELFGKRSDRALILASHNAALIREHCTRAMVLHDGRGTMHDDIDLALRHYEAL

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=192, Percent_Identity=31.7708333333333, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI153792144, Length=222, Percent_Identity=27.9279279279279, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI27436953, Length=230, Percent_Identity=26.5217391304348, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI6005701, Length=230, Percent_Identity=29.1304347826087, Blast_Score=71, Evalue=6e-13,
Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=27.9475982532751, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789751, Length=191, Percent_Identity=28.7958115183246, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: =3.6.3.38 [H]

Molecular weight: Translated: 24108; Mature: 24108

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITCQMIHKTYAAGHGERKVLRGLDFAISRGEHVGFLGRNGAGKTTLIKLLGGVEFPTAG
CEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC
TIRRRMTVSWPLGFGGGFQGSLTGYDNARFIARIYGMSYRDIADFVEDFTELGRQLRAPV
CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
KTYSQGMRARLAFALSMAIEFDCYLVDEVILVGDHRFHEKCRLELFGKRSDRALILASHN
HHHHHHHHHHHHHHHHHHHEECEEEEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCC
AALIREHCTRAMVLHDGRGTMHDDIDLALRHYEAL
HHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MITCQMIHKTYAAGHGERKVLRGLDFAISRGEHVGFLGRNGAGKTTLIKLLGGVEFPTAG
CEEHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCC
TIRRRMTVSWPLGFGGGFQGSLTGYDNARFIARIYGMSYRDIADFVEDFTELGRQLRAPV
CCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
KTYSQGMRARLAFALSMAIEFDCYLVDEVILVGDHRFHEKCRLELFGKRSDRALILASHN
HHHHHHHHHHHHHHHHHHHEECEEEEEEEEEECCCHHHHHHHHHEECCCCCCEEEEECCC
AALIREHCTRAMVLHDGRGTMHDDIDLALRHYEAL
HHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]