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The map label for this gene is ihfB [H]

Identifier: 87198191

GI number: 87198191

Start: 163591

End: 163872

Strand: Direct

Name: ihfB [H]

Synonym: Saro_0165

Alternate gene names: 87198191

Gene position: 163591-163872 (Clockwise)

Preceding gene: 87198190

Following gene: 87198192

Centisome position: 4.59

GC content: 63.48

Gene sequence:

>282_bases
ATGATCAGGTCGGAGCTGTTGCAGGCGCTCGCAAAAGAGAGCCCGGGTATGCGCAGCGAGGAAATCGAGCGGGTCGTCGA
CGTGTTCTTCGACGAGATCGCAAAGCGGCTCGCAGAAGGCGGGCGTGTTGAACTGCGCGGCTTCGGCGCCTTCTCCACGC
GCGAACGTGACGCGCGCAAGGGACGCAATCCCCGCACCGGCGAAACCGTCGAGGTTCCGGGCAAGAAAGTGCCCTACTTC
AAGGCTGGCAAGGAAATGCGGCAGCGGCTGAACGCCGACTGA

Upstream 100 bases:

>100_bases
TCATGCATGGCAGGATCACCGCTTGTGCTCGTACGGGGGTTCGGGCGCAGGGATCGTCAATAGGGGGGCGTCCACGAGGA
TGCCTGGCGGAGGGAAGCAC

Downstream 100 bases:

>100_bases
CGCTTGCGGTGGGGACGGCGGTCACGTGTCGCCGGCCATCTTCTTGCGAACAACGCCACACGGGCGCCGCTGCGTGACGT
TGCAGCGGCGCCCTTCGTGT

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARKGRNPRTGETVEVPGKKVPYF
KAGKEMRQRLNAD

Sequences:

>Translated_93_residues
MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARKGRNPRTGETVEVPGKKVPYF
KAGKEMRQRLNAD
>Mature_93_residues
MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARKGRNPRTGETVEVPGKKVPYF
KAGKEMRQRLNAD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=46.1538461538462, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1788005, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10567; Mature: 10567

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHC
GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD
CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHC
GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD
CCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA