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The map label for this gene is xseB

Identifier: 86751557

GI number: 86751557

Start: 5048004

End: 5048255

Strand: Direct

Name: xseB

Synonym: RPB_4459

Alternate gene names: 86751557

Gene position: 5048004-5048255 (Clockwise)

Preceding gene: 86751556

Following gene: 86751558

Centisome position: 94.68

GC content: 67.86

Gene sequence:

>252_bases
ATGGCCGACGCCGCCCCCGCCGATGTCAAGAAGCTGAGCTTCGAGCGCGCGATGGAGGAACTCGAAACCATCGTCAAGCG
GCTCGAGGACGGCAAGGTTCCGCTGGAGGAGTCGGTCGCGATCTACGAGCGCGGCGAGGCGCTGAAGCGGCGCTGCGAGG
AACTGCTGCGCCAGGCCGAGGCCCGCGTGGACAAGATTACCACCGATGCCCAGGGGCAGCCGGTCGGAACCGAGCCGCTC
GACGTCCAGTAG

Upstream 100 bases:

>100_bases
CTCATGTCGGCGCGCTGATGGGCGCCTGACCGGCGCCTCCGCCTCGACGGCTCACAACAACAAGCCGCCGGCCGCGCCGC
GGCGCATCCAGGAGCCGCCG

Downstream 100 bases:

>100_bases
AGCATTTTCGGGCTATTTCGATAGGATTCCGCGCGAAATGCGCCCCAGATGCGACCTGACAGGTCGTTCAGGAAACTGAC
AGCTTCCATCCGTCTTAGCT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKRRCEELLRQAEARVDKITTDAQGQPVGTEPL
DVQ

Sequences:

>Translated_83_residues
MADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKRRCEELLRQAEARVDKITTDAQGQPVGTEPL
DVQ
>Mature_82_residues
ADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKRRCEELLRQAEARVDKITTDAQGQPVGTEPLD
VQ

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_RHOP2 (Q2IRL8)

Other databases:

- EMBL:   CP000250
- RefSeq:   YP_488053.1
- ProteinModelPortal:   Q2IRL8
- SMR:   Q2IRL8
- STRING:   Q2IRL8
- GeneID:   3912275
- GenomeReviews:   CP000250_GR
- KEGG:   rpb:RPB_4459
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   CEELLRT
- ProtClustDB:   PRK00977
- BioCyc:   RPAL316058:RPB_4459-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9283; Mature: 9151

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKRRCEELLRQAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVDKITTDAQGQPVGTEPLDVQ
HHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADAAPADVKKLSFERAMEELETIVKRLEDGKVPLEESVAIYERGEALKRRCEELLRQAE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARVDKITTDAQGQPVGTEPLDVQ
HHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA