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The map label for this gene is rhiR [H]

Identifier: 86750432

GI number: 86750432

Start: 3799518

End: 3800240

Strand: Reverse

Name: rhiR [H]

Synonym: RPB_3321

Alternate gene names: 86750432

Gene position: 3800240-3799518 (Counterclockwise)

Preceding gene: 86750434

Following gene: 86750431

Centisome position: 71.28

GC content: 58.23

Gene sequence:

>723_bases
ATGTCTCGCGGCGCTCTAGAAGATACTCTTACTTTCGTAGCTGCGCTGGACCGGGCGAACACGCCGGACATCGTCGCCGA
CAAGCTGCTCGGCGTCGTCCGACCGTTTGGCTATTCGCAAGTGTTGGCGGGCATCATTCCGACGCCAAGGACTTCTGTGA
AGCAGCAAATCGCTAACGTCGTGCTGCATCGTTGGCCTTTGCGCTGGAGCGAGCGCTACTTCTCCCGGGGGTACCTTTTC
GAAGATCCTACCATTCGACGCGTCTCGACTTCTTCCGAGCCGTTTGTGTGGTCAGAGTTGCAGGTCGGTCCCGACGCTCG
CGCGAACGAAATCATGAGAGAAGCCGGTGAGTTTGGGTTGGGCTGCGGCTTCACGGTTCCTATGATCACGTTGGATGGGC
AGTCGGCGGGGCTGTCGATAGCGGGAGACCGTGCAGAGCTTCCGCCGTCGCATCGCGGTATGGTTCAGCTTGTCGCAATG
TATGCCTTCCTGCGCTCCCTCAAGCTCGGCGAGAAGCCCACCCCGGCCATCACTCTGACCAAGCGGGAAGCCGATGTCCT
GCACTGGATCGCGGAGGGCAAAACAGACTGGGAAATCTCGAAAATTCTTCGCGTCTCCGAGCACCTAGTGGACAAGATGG
CGCGCCAAATTAGAACGAAGCTAGGCGCCGTTAACCGGATACAGGCTGTGGCACTTGCTATGAGATCAGGGATAATTCGT
TGA

Upstream 100 bases:

>100_bases
GCCTGCGCGTTTAGCGCAGTGGCACTCCCAGCGTCGCAGTCTGGTTGCGCAATTGCCGCGACTTGACCTAGGATTGCGTC
GATCGGCGAGGGCGGCACAG

Downstream 100 bases:

>100_bases
TTTGTCAAGGTACGGAAAGCCGTACTAGCTGAATCAGGAGCTTCACCAGATCATCTCCCCGCACAAATCAGAAGGGGAGA
GTGCAATGATCCACCTCGTC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWPLRWSERYFSRGYLF
EDPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAM
YAFLRSLKLGEKPTPAITLTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR

Sequences:

>Translated_240_residues
MSRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWPLRWSERYFSRGYLF
EDPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAM
YAFLRSLKLGEKPTPAITLTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR
>Mature_239_residues
SRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWPLRWSERYFSRGYLFE
DPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMY
AFLRSLKLGEKPTPAITLTKREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR

Specific function: Positive regulator of the rhiABC operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=184, Percent_Identity=26.6304347826087, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26637; Mature: 26506

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANV
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
VLHRWPLRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGL
HHHHCCCHHHHHHHHCCCEECCCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
GCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKPTPAITLT
CCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
KREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPRTSVKQQIANV
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH
VLHRWPLRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSELQVGPDARANEIMREAGEFGL
HHHHCCCHHHHHHHHCCCEECCCCCEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
GCGFTVPMITLDGQSAGLSIAGDRAELPPSHRGMVQLVAMYAFLRSLKLGEKPTPAITLT
CCCCEEEEEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
KREADVLHWIAEGKTDWEISKILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1597418 [H]