| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is ygfF [C]
Identifier: 86750190
GI number: 86750190
Start: 3507064
End: 3507828
Strand: Reverse
Name: ygfF [C]
Synonym: RPB_3076
Alternate gene names: 86750190
Gene position: 3507828-3507064 (Counterclockwise)
Preceding gene: 86750191
Following gene: 86750189
Centisome position: 65.79
GC content: 64.84
Gene sequence:
>765_bases ATGAGCGGGGCATTGGTTGGTAAGACGGCGCTGGTCACCGGCTCGAGCCGCGGCATCGGACGGGCGATCGCGATCGCTGC TGCGCGCGAAGGCGCGGTTGTCGGCGTGCACTATGCCGGTGGCGCCGATGCGGCCGGGGAGACTCTCGATGCGATCCGGG CCGGGGGCGGCGACGGCTTTCTGCTTCAGGCCGATCTGTCCGAGCGGGGCGGCCCCGACGCGCTGGCGGCGAAATTTCTC GACGAAGTCGAACAGCGCACCGGACAGCGCAGCTTCGACCTATTGGTCAACAATGCCGGTTATGGCGGGCGCTACCGGAT CGACCAGGTCGACGACGAGATCTTTGATCGCATGATCGCGGTCAATTTCCGGGCGCCGTTCTTTCTGACCCGCGCGCTTC ATCCAGCGATCAGAGACGGCGGTCGCATCGTCAACGTCTCGTCAATGGGAACCCGGGCGGCGTTTCCCGATATGAGCATT TACGCGCCGTCGAAGGCGGCATTGGAGACTCTAAGCGTGGTCCTGGCCAAGCAGCTGGGTCGCCGCGGCATCACCGTCAA TGCTGTCTTGCCCGGCGCGACGGTGACGGACATGAACCCGCTCGACAAGGATCAGGCGCGTGCTGCCGCTGCTACCGAGA CAATTACACTCCAGCGCCTCGGTCGACCGAACGACATTGCGGGAGTGGTGCTGATGCTGCTGTCGGATGCTGGTGGATGG ATCACTGGCCAGCGAATCGACGCCTCGGGCGGGCAAAGGCTCTGA
Upstream 100 bases:
>100_bases CCGGCACCAACAAGATCGATCGCGCGGCGCTGATCCGCGAGGCCAAGCAACTGGAAGCCACCAATGGCTGGTCGGTTTCC TCCCACGCCGAAGCCGCCGC
Downstream 100 bases:
>100_bases TCTAGTATGGGGTAATCGCGGGTTGGAGAAACTGCCGTACCGGCTTTTACCCATGTTCGATTGAGACTGCCCGTTGGATA TTTGGGTGGCATTAGAAACA
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: ORFC [H]
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MSGALVGKTALVTGSSRGIGRAIAIAAAREGAVVGVHYAGGADAAGETLDAIRAGGGDGFLLQADLSERGGPDALAAKFL DEVEQRTGQRSFDLLVNNAGYGGRYRIDQVDDEIFDRMIAVNFRAPFFLTRALHPAIRDGGRIVNVSSMGTRAAFPDMSI YAPSKAALETLSVVLAKQLGRRGITVNAVLPGATVTDMNPLDKDQARAAAATETITLQRLGRPNDIAGVVLMLLSDAGGW ITGQRIDASGGQRL
Sequences:
>Translated_254_residues MSGALVGKTALVTGSSRGIGRAIAIAAAREGAVVGVHYAGGADAAGETLDAIRAGGGDGFLLQADLSERGGPDALAAKFL DEVEQRTGQRSFDLLVNNAGYGGRYRIDQVDDEIFDRMIAVNFRAPFFLTRALHPAIRDGGRIVNVSSMGTRAAFPDMSI YAPSKAALETLSVVLAKQLGRRGITVNAVLPGATVTDMNPLDKDQARAAAATETITLQRLGRPNDIAGVVLMLLSDAGGW ITGQRIDASGGQRL >Mature_253_residues SGALVGKTALVTGSSRGIGRAIAIAAAREGAVVGVHYAGGADAAGETLDAIRAGGGDGFLLQADLSERGGPDALAAKFLD EVEQRTGQRSFDLLVNNAGYGGRYRIDQVDDEIFDRMIAVNFRAPFFLTRALHPAIRDGGRIVNVSSMGTRAAFPDMSIY APSKAALETLSVVLAKQLGRRGITVNAVLPGATVTDMNPLDKDQARAAAATETITLQRLGRPNDIAGVVLMLLSDAGGWI TGQRIDASGGQRL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.9920948616601, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=35.3174603174603, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI7705925, Length=258, Percent_Identity=31.7829457364341, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.8537549407115, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=27.0676691729323, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI126723191, Length=196, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=204, Percent_Identity=30.3921568627451, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=35.6, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=31.6205533596838, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=36, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=34.9206349206349, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789378, Length=258, Percent_Identity=32.1705426356589, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=34.2857142857143, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=30.0395256916996, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=27.8884462151394, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87082100, Length=265, Percent_Identity=32.8301886792453, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=28.0632411067194, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=31.9391634980989, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787526, Length=257, Percent_Identity=30.3501945525292, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=27.1317829457364, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=37.0786516853933, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.5490196078431, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=32.295719844358, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=34.4569288389513, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=35.2059925093633, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.9803921568627, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=32.3308270676692, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538480, Length=273, Percent_Identity=32.2344322344322, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=31.3207547169811, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=28.4, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=31.3432835820896, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=32.089552238806, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=32.7067669172932, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=32.9588014981273, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=33.5820895522388, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.9701492537313, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=31.5018315018315, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.9803921568627, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.8352059925094, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.2238805970149, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.9433962264151, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=30.7116104868914, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565030, Length=277, Percent_Identity=31.7689530685921, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.5019157088123, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=26.3565891472868, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17564282, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=29.2490118577075, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555612, Length=225, Percent_Identity=30.6666666666667, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI86565303, Length=215, Percent_Identity=29.7674418604651, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=33.976833976834, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=29.9212598425197, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=32.8125, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=30.5882352941176, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=29.9212598425197, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI23397609, Length=260, Percent_Identity=30.3846153846154, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI24643142, Length=235, Percent_Identity=29.3617021276596, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24644337, Length=192, Percent_Identity=31.25, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26434; Mature: 26303
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGALVGKTALVTGSSRGIGRAIAIAAAREGAVVGVHYAGGADAAGETLDAIRAGGGDGF CCCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHCCCCCCE LLQADLSERGGPDALAAKFLDEVEQRTGQRSFDLLVNNAGYGGRYRIDQVDDEIFDRMIA EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCHHHHHHHHHEEE VNFRAPFFLTRALHPAIRDGGRIVNVSSMGTRAAFPDMSIYAPSKAALETLSVVLAKQLG EECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHC RRGITVNAVLPGATVTDMNPLDKDQARAAAATETITLQRLGRPNDIAGVVLMLLSDAGGW CCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHCCCCE ITGQRIDASGGQRL EECCEEECCCCCCC >Mature Secondary Structure SGALVGKTALVTGSSRGIGRAIAIAAAREGAVVGVHYAGGADAAGETLDAIRAGGGDGF CCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHCCCCCCE LLQADLSERGGPDALAAKFLDEVEQRTGQRSFDLLVNNAGYGGRYRIDQVDDEIFDRMIA EEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCHHHHHHHHHEEE VNFRAPFFLTRALHPAIRDGGRIVNVSSMGTRAAFPDMSIYAPSKAALETLSVVLAKQLG EECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHC RRGITVNAVLPGATVTDMNPLDKDQARAAAATETITLQRLGRPNDIAGVVLMLLSDAGGW CCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHEEHHHCCCCCHHHHHHHHHHHCCCCE ITGQRIDASGGQRL EECCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8868443 [H]