Click here to switch to the map view.

The map label for this gene is sufD [C]

Identifier: 86750108

GI number: 86750108

Start: 3404948

End: 3406261

Strand: Reverse

Name: sufD [C]

Synonym: RPB_2991

Alternate gene names: 86750108

Gene position: 3406261-3404948 (Counterclockwise)

Preceding gene: 86750109

Following gene: 86750107

Centisome position: 63.89

GC content: 68.95

Gene sequence:

>1314_bases
ATGAATATCGCAGTGGCGAAGACCGACAAGATGGATATGGCCGGGGCGAATTTGGCCAGCGTCGTCGCGCGCCAGCCGGA
TGCCGGCCAGGTCGCCGACGCGCGCCGCGACGCGCTGGCCGCGTTCCAGCGCATCGGCCTGCCGCATCGCCGGATCGAGG
ATTGGAAGTACACCGACCTGCGCGCGCTGATGCGCGAGGTGCTGCCGGTGGCGCCGGCGCCGGATGCGGCTGCGCTGGCG
CGCGCCGAAGCGGCGGTGAAGCTGCATGCGATCGACGGCGTGCGCCGGCTGGTGCTGGTCGACGGCGCGCTGGTGCCGTC
GCTGTCCGATCTGACGGCGCTGGAGGCCGGGCTATCGATCCGCAGCCTGCGCGATGCGCTCGACGCCGGCGACGACCGGC
TGCTGTCGCTCGACAATGCCAATCCGATGACGGCGCTCAACACCGCGCTGATGACCGACGGCGTGGTGATCGAGGTGGCC
GACGGTGCCAAGCCGGCGCGGCCGCTGCACATTCTCCACATCGCGTCCGGTGGCGCACCCGCGGCGATGTTCACGCGCTC
GCTGATTTCGATCGGCAACAATGCCGCCGCGACGGTGGTCGAAAGCTATGTCGCGAGCGAGGGTGCCGGCGTCTATCAGG
TCCACGACGCGGCGGTGATCGCGATCGGCGACGGCGCGCGGCTGGATCACGTCCGGTTGATCGAAGATTCGCGCGAGGCG
TTCAGCATCGCCGCCGCCGAAGTGCGCGTCGGCGCGCATGCACACTACAACGTCGTCGGAATCGCGACCGGCGCGCTGGT
CAGCCGCTATTCGTCGACCGTGACGATCGCCGGCGAGCACGCGCAGGTCGAGACCAACGGCGTCAATCTGTTGAACGGCA
AGCAGCATGCCGACACCACGCTGGTGATGAATCACGACGTGCCGCATTGCGTCAGCCGCGAAGGGTTTCGCGCGGTGGCC
GATGATCGCGGACACTCGGTGTTCCAGGGCCGTATCAATGTGCGCCAGCCGGCGCAGCAGACCGATGCCAAGATGATGAC
GCGGGCGCTGCTGCTTTCCGACGAGGCCGAGGCCGACAACAAGCCGGAACTCGAGATCTTCGCCGACGACGTCACCTGCG
GCCACGGCGCCGCGATCGGCGCGCTCGACGATCAACTGCTGTTCTATCTGCGCGCGCGCGGTCTCGCCGAGAAGGAGGCC
GAGGCGCTGCTGATCCAGGCCTTCGTCGGCGAGGCGATCGAGGCGATCGCCGACGACAATCTGCGCGAACTCGCGATCGG
CGCCGCCGAGCGCTGGCTGGCGGCGCGGGGGTAG

Upstream 100 bases:

>100_bases
GTGGTGAAGAGCGGCGGCAAGGAGCTGGCGCTCGAACTCGAAGCCAATGGCTACGCGCAATATCAGGACGCGGCGGCCTG
AGGCGGATCGGACGGATCAG

Downstream 100 bases:

>100_bases
GGCGGACAATCATGCAGTCGGCGTCCCGGAGCCAGAAGCGAGCACGCACTTCACCTCTCCCCGCGTGCGGGGAGAGGTCG
GATCGTCGCGTAGCGATGAT

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MNIAVAKTDKMDMAGANLASVVARQPDAGQVADARRDALAAFQRIGLPHRRIEDWKYTDLRALMREVLPVAPAPDAAALA
RAEAAVKLHAIDGVRRLVLVDGALVPSLSDLTALEAGLSIRSLRDALDAGDDRLLSLDNANPMTALNTALMTDGVVIEVA
DGAKPARPLHILHIASGGAPAAMFTRSLISIGNNAAATVVESYVASEGAGVYQVHDAAVIAIGDGARLDHVRLIEDSREA
FSIAAAEVRVGAHAHYNVVGIATGALVSRYSSTVTIAGEHAQVETNGVNLLNGKQHADTTLVMNHDVPHCVSREGFRAVA
DDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADNKPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEA
EALLIQAFVGEAIEAIADDNLRELAIGAAERWLAARG

Sequences:

>Translated_437_residues
MNIAVAKTDKMDMAGANLASVVARQPDAGQVADARRDALAAFQRIGLPHRRIEDWKYTDLRALMREVLPVAPAPDAAALA
RAEAAVKLHAIDGVRRLVLVDGALVPSLSDLTALEAGLSIRSLRDALDAGDDRLLSLDNANPMTALNTALMTDGVVIEVA
DGAKPARPLHILHIASGGAPAAMFTRSLISIGNNAAATVVESYVASEGAGVYQVHDAAVIAIGDGARLDHVRLIEDSREA
FSIAAAEVRVGAHAHYNVVGIATGALVSRYSSTVTIAGEHAQVETNGVNLLNGKQHADTTLVMNHDVPHCVSREGFRAVA
DDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADNKPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEA
EALLIQAFVGEAIEAIADDNLRELAIGAAERWLAARG
>Mature_437_residues
MNIAVAKTDKMDMAGANLASVVARQPDAGQVADARRDALAAFQRIGLPHRRIEDWKYTDLRALMREVLPVAPAPDAAALA
RAEAAVKLHAIDGVRRLVLVDGALVPSLSDLTALEAGLSIRSLRDALDAGDDRLLSLDNANPMTALNTALMTDGVVIEVA
DGAKPARPLHILHIASGGAPAAMFTRSLISIGNNAAATVVESYVASEGAGVYQVHDAAVIAIGDGARLDHVRLIEDSREA
FSIAAAEVRVGAHAHYNVVGIATGALVSRYSSTVTIAGEHAQVETNGVNLLNGKQHADTTLVMNHDVPHCVSREGFRAVA
DDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADNKPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEA
EALLIQAFVGEAIEAIADDNLRELAIGAAERWLAARG

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=385, Percent_Identity=32.4675324675325, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46166; Mature: 46166

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAVAKTDKMDMAGANLASVVARQPDAGQVADARRDALAAFQRIGLPHRRIEDWKYTDL
CCEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
RALMREVLPVAPAPDAAALARAEAAVKLHAIDGVRRLVLVDGALVPSLSDLTALEAGLSI
HHHHHHHCCCCCCCCHHHHHHHHHHEEEEEHHHHEEEEEECCCCCCCHHHHHHHHHCCHH
RSLRDALDAGDDRLLSLDNANPMTALNTALMTDGVVIEVADGAKPARPLHILHIASGGAP
HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCC
AAMFTRSLISIGNNAAATVVESYVASEGAGVYQVHDAAVIAIGDGARLDHVRLIEDSREA
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECEEEEEECCCCCCCEEEEECCCHHH
FSIAAAEVRVGAHAHYNVVGIATGALVSRYSSTVTIAGEHAQVETNGVNLLNGKQHADTT
HHHHHHHEEECCCCCEEEEEEHHHHHHHHCCCEEEEECCCEEEEECCEEEECCCCCCCEE
LVMNHDVPHCVSREGFRAVADDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADN
EEEECCCCHHHCCCCCEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
KPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEAEALLIQAFVGEAIEAIADDN
CCCEEEEECCCCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LRELAIGAAERWLAARG
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIAVAKTDKMDMAGANLASVVARQPDAGQVADARRDALAAFQRIGLPHRRIEDWKYTDL
CCEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHH
RALMREVLPVAPAPDAAALARAEAAVKLHAIDGVRRLVLVDGALVPSLSDLTALEAGLSI
HHHHHHHCCCCCCCCHHHHHHHHHHEEEEEHHHHEEEEEECCCCCCCHHHHHHHHHCCHH
RSLRDALDAGDDRLLSLDNANPMTALNTALMTDGVVIEVADGAKPARPLHILHIASGGAP
HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCC
AAMFTRSLISIGNNAAATVVESYVASEGAGVYQVHDAAVIAIGDGARLDHVRLIEDSREA
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECEEEEEECCCCCCCEEEEECCCHHH
FSIAAAEVRVGAHAHYNVVGIATGALVSRYSSTVTIAGEHAQVETNGVNLLNGKQHADTT
HHHHHHHEEECCCCCEEEEEEHHHHHHHHCCCEEEEECCCEEEEECCEEEECCCCCCCEE
LVMNHDVPHCVSREGFRAVADDRGHSVFQGRINVRQPAQQTDAKMMTRALLLSDEAEADN
EEEECCCCHHHCCCCCEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
KPELEIFADDVTCGHGAAIGALDDQLLFYLRARGLAEKEAEALLIQAFVGEAIEAIADDN
CCCEEEEECCCCCCCCCEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LRELAIGAAERWLAARG
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]