Click here to switch to the map view.

The map label for this gene is ygeR [H]

Identifier: 86749853

GI number: 86749853

Start: 3120772

End: 3122196

Strand: Reverse

Name: ygeR [H]

Synonym: RPB_2736

Alternate gene names: 86749853

Gene position: 3122196-3120772 (Counterclockwise)

Preceding gene: 86749854

Following gene: 86749850

Centisome position: 58.56

GC content: 71.72

Gene sequence:

>1425_bases
ATGTCCCGCGTAGTCGAGTTGCTTTACTCGCGCCGGGCCCCGCAAATGGCGGTGCTGGCGTTCGTTTCGGTCGGATTCAG
CGCGTGCAGCGCGGACATGCAGACCCGTTTTCAGCAGGCCCCGTTCGGGCCGGTCGAAACCACCGGGTCGGTGCAGCGGC
AGGCGCCGCCGCAGCAGCGCTATGCCGAGCCGCGTGAGCTGCCGCAATATGCGCGGCCGCAATATCAGCCCGCCCAGCCG
CAATACCAGTCGCAGGCCTTGCCGCCGATCTCGGCGCCACCGTCCTATCCGGTCGCGGGTGGCGGCAGTGGCGTGTCGGG
CGGCGGACGTGGCGTCGGCTCCTACGAGCCGCCGGCGCGCGCCCCGATGGAAACCACCGGCACCGTGGCGCCGCGTTCGG
TCGCTGCGGCGCGGCCGGCTCCCGCGCCGGGCCCGGCGCCTGTTCCGGCCAGCGGCACCACCATCATCGTCGGCACCAGC
GATACGCTGGAAGGCCTGGCGCGTCGCTACAACGTCTCGACCGCCGATATTCTGCACGCCAATGGCTACAAGGGGCCCCG
CCGCCTGCAGCCCGGCCAGTCGCTGGTGATCCCGAGCCGCGTCGCCACGCTGCAGGCGCCTGCCGCCGCGCCGCCGGCGA
CCCGTCCGGTCGCGGCTGCTGCGCCGGTGGCCGCCGCCGCGCCGCCGCGGGTGCACTATGTCAACAACGGCGACACGCTG
ATGAACATCGCGCGCCGCAACAACATCTCGCTGAGCGAGCTGGCGCGCTACAATCGCCTCGACACCACTACCCGGCTGAA
GCCCGGCATGAAGATCAACGTGCCGGGCAGCCGCGCCACCGCAGCGGCGACGCAAGCCGCCGCGCCGGCCCAGGTCGCCG
CCGCGCCGGCTGCGGCGCCGGTCGCCGCACCGCCGGTGCGGATGGCGGCCGCGGTGCCGGCCGATCCGGTGCAGAAGGCG
CGTCTGGTTTCGCCGACCGAAACACCGGCCGCAGCCGCGCCCGCCGAAGCCGCGCCGGTCAAGGCGGCCGAGGCTACCGG
CGCGCTGCCGAGCTTCCGCTGGCCGGTGCGCGGCCGGGTCATCACCGCCTATGGCGCCAAGACCAACGGCAAGTCGAACG
ACGGCATCAACCTCGCGGTGCCGGAAGGCACCCCGATCAAGGCGGCCGAGGACGGCGTCGTGGCGTATTCCGGCAACGAG
CTGAAGGGCTACGGCAACCTCGTGCTGGTGCGCCATTCCAACGGCTACGTCACCGCCTACGCCCATGCCAGCGAACTGAT
GGTCAAGCGCGGCGAGACCATCAAGCGCGGCCAGACCATCGCGAAATCCGGACAGTCGGGTGAAGTCGGCTCACCGCAGC
TGCACTTCGAGATCCGCAAGGGATCGTCCCCGGTCGATCCGCTCAAGTTCCTCAACGGCGCCTGA

Upstream 100 bases:

>100_bases
AGCGTCGTCCGTCAAGGCCCGTCGCGGCGCAGGGTTAAACGCTTGTTTACTGCCGACGTGTTTACTCAATTTACCTTGAG
TTGCGTATGAGTGAGTAACC

Downstream 100 bases:

>100_bases
GCAGCGCCGTCGAGGGAAGCGTGCCTGACAAGCGAAATGCCCGACCAAAGGTCGGGCATTTTTTTGGCGAAGTGCGGCGC
CGCGCCTAGCGGACGTCGAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSRVVELLYSRRAPQMAVLAFVSVGFSACSADMQTRFQQAPFGPVETTGSVQRQAPPQQRYAEPRELPQYARPQYQPAQP
QYQSQALPPISAPPSYPVAGGGSGVSGGGRGVGSYEPPARAPMETTGTVAPRSVAAARPAPAPGPAPVPASGTTIIVGTS
DTLEGLARRYNVSTADILHANGYKGPRRLQPGQSLVIPSRVATLQAPAAAPPATRPVAAAAPVAAAAPPRVHYVNNGDTL
MNIARRNNISLSELARYNRLDTTTRLKPGMKINVPGSRATAAATQAAAPAQVAAAPAAAPVAAPPVRMAAAVPADPVQKA
RLVSPTETPAAAAPAEAAPVKAAEATGALPSFRWPVRGRVITAYGAKTNGKSNDGINLAVPEGTPIKAAEDGVVAYSGNE
LKGYGNLVLVRHSNGYVTAYAHASELMVKRGETIKRGQTIAKSGQSGEVGSPQLHFEIRKGSSPVDPLKFLNGA

Sequences:

>Translated_474_residues
MSRVVELLYSRRAPQMAVLAFVSVGFSACSADMQTRFQQAPFGPVETTGSVQRQAPPQQRYAEPRELPQYARPQYQPAQP
QYQSQALPPISAPPSYPVAGGGSGVSGGGRGVGSYEPPARAPMETTGTVAPRSVAAARPAPAPGPAPVPASGTTIIVGTS
DTLEGLARRYNVSTADILHANGYKGPRRLQPGQSLVIPSRVATLQAPAAAPPATRPVAAAAPVAAAAPPRVHYVNNGDTL
MNIARRNNISLSELARYNRLDTTTRLKPGMKINVPGSRATAAATQAAAPAQVAAAPAAAPVAAPPVRMAAAVPADPVQKA
RLVSPTETPAAAAPAEAAPVKAAEATGALPSFRWPVRGRVITAYGAKTNGKSNDGINLAVPEGTPIKAAEDGVVAYSGNE
LKGYGNLVLVRHSNGYVTAYAHASELMVKRGETIKRGQTIAKSGQSGEVGSPQLHFEIRKGSSPVDPLKFLNGA
>Mature_473_residues
SRVVELLYSRRAPQMAVLAFVSVGFSACSADMQTRFQQAPFGPVETTGSVQRQAPPQQRYAEPRELPQYARPQYQPAQPQ
YQSQALPPISAPPSYPVAGGGSGVSGGGRGVGSYEPPARAPMETTGTVAPRSVAAARPAPAPGPAPVPASGTTIIVGTSD
TLEGLARRYNVSTADILHANGYKGPRRLQPGQSLVIPSRVATLQAPAAAPPATRPVAAAAPVAAAAPPRVHYVNNGDTLM
NIARRNNISLSELARYNRLDTTTRLKPGMKINVPGSRATAAATQAAAPAQVAAAPAAAPVAAPPVRMAAAVPADPVQKAR
LVSPTETPAAAAPAEAAPVKAAEATGALPSFRWPVRGRVITAYGAKTNGKSNDGINLAVPEGTPIKAAEDGVVAYSGNEL
KGYGNLVLVRHSNGYVTAYAHASELMVKRGETIKRGQTIAKSGQSGEVGSPQLHFEIRKGSSPVDPLKFLNGA

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=241, Percent_Identity=32.7800829875519, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=44.1666666666667, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=37.8151260504202, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=38.9473684210526, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 48881; Mature: 48750

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVVELLYSRRAPQMAVLAFVSVGFSACSADMQTRFQQAPFGPVETTGSVQRQAPPQQR
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHH
YAEPRELPQYARPQYQPAQPQYQSQALPPISAPPSYPVAGGGSGVSGGGRGVGSYEPPAR
CCCHHHCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APMETTGTVAPRSVAAARPAPAPGPAPVPASGTTIIVGTSDTLEGLARRYNVSTADILHA
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHEEEEC
NGYKGPRRLQPGQSLVIPSRVATLQAPAAAPPATRPVAAAAPVAAAAPPRVHYVNNGDTL
CCCCCCCCCCCCCCEECCHHHHHEECCCCCCCCCCCCHHHCCHHHCCCCEEEEECCCHHH
MNIARRNNISLSELARYNRLDTTTRLKPGMKINVPGSRATAAATQAAAPAQVAAAPAAAP
HHHHHHCCCCHHHHHHHHCCCCHHCCCCCCEEECCCCCHHHHHHHHCCCHHHHCCCCCCC
VAAPPVRMAAAVPADPVQKARLVSPTETPAAAAPAEAAPVKAAEATGALPSFRWPVRGRV
CCCCCHHHHCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEE
ITAYGAKTNGKSNDGINLAVPEGTPIKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAY
EEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCEECCCCCEEEEEECCCEEEEE
AHASELMVKRGETIKRGQTIAKSGQSGEVGSPQLHFEIRKGSSPVDPLKFLNGA
ECHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCC
>Mature Secondary Structure 
SRVVELLYSRRAPQMAVLAFVSVGFSACSADMQTRFQQAPFGPVETTGSVQRQAPPQQR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCHHH
YAEPRELPQYARPQYQPAQPQYQSQALPPISAPPSYPVAGGGSGVSGGGRGVGSYEPPAR
CCCHHHCHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APMETTGTVAPRSVAAARPAPAPGPAPVPASGTTIIVGTSDTLEGLARRYNVSTADILHA
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHEEEEC
NGYKGPRRLQPGQSLVIPSRVATLQAPAAAPPATRPVAAAAPVAAAAPPRVHYVNNGDTL
CCCCCCCCCCCCCCEECCHHHHHEECCCCCCCCCCCCHHHCCHHHCCCCEEEEECCCHHH
MNIARRNNISLSELARYNRLDTTTRLKPGMKINVPGSRATAAATQAAAPAQVAAAPAAAP
HHHHHHCCCCHHHHHHHHCCCCHHCCCCCCEEECCCCCHHHHHHHHCCCHHHHCCCCCCC
VAAPPVRMAAAVPADPVQKARLVSPTETPAAAAPAEAAPVKAAEATGALPSFRWPVRGRV
CCCCCHHHHCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEE
ITAYGAKTNGKSNDGINLAVPEGTPIKAAEDGVVAYSGNELKGYGNLVLVRHSNGYVTAY
EEEECCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCEECCCCCEEEEEECCCEEEEE
AHASELMVKRGETIKRGQTIAKSGQSGEVGSPQLHFEIRKGSSPVDPLKFLNGA
ECHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]