| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is dhfrIII [H]
Identifier: 86749159
GI number: 86749159
Start: 2316856
End: 2317395
Strand: Direct
Name: dhfrIII [H]
Synonym: RPB_2037
Alternate gene names: 86749159
Gene position: 2316856-2317395 (Clockwise)
Preceding gene: 86749158
Following gene: 86749160
Centisome position: 43.45
GC content: 63.7
Gene sequence:
>540_bases GTGAGTAGCCCGGGAGTTAGCTCGCGACTGTCGATCGTCCTCATCGTGGCGGTTGCCGACAATGGCGTGATCGGGCGGGA CAACGCGATTCCGTGGCGGCTGAAATCCGACCTGCAGCGCTTCAAGCAACTGACGCTGAACAAGCCGATCATCATGGGTC GCAAGACCTATCAGTCGATCGGCCGGCCGTTGCCGGGACGAACCAATATCGTGGTGACCCGAGACCCGACCTTCCATGCG GACGGCGTGGTGGTCGTGCCGTCATTCGACGCCGCGGAGCAAGTCGCATGCGGCGATGCGATGCGGCGTTTTGCCACCGA AATCGCGGTGATCGGCGGCGCGGAAATCTATGCGCACTGGCTGCCGCGCGCGACTCGGATCGAATTGACCGAGGTACATG CGAGCCCGCCGGGCGATGCGACTTTTCCCGCGCTCGACCCGTCGCAGTGGGAGGAAACGGCTCGGACGCATCACGCAGCC GGCCCCCAGGACAGCGCCGATGTCTCGTATGTGACCTATCGACGCTGCACTGCACGTTAA
Upstream 100 bases:
>100_bases CGATCAATCCCGCCGTGACCGACATCTTCGGCTTCCGCTACGAAGACTTCACCCTGCACGGCTACGATCCGCACCCGCAC ATCAAGGCGGAGGTGGCGGT
Downstream 100 bases:
>100_bases CCTTGAGCACCGCGCGATCCACATTGACAAAATTGCGGCAGGGCTTAGCTCGCGACAAGTGACGACGCGCGTTGTGCCTG CCGGGCCCGTCCCCTATAAA
Product: dihydrofolate reductase
Products: NA
Alternate protein names: Dihydrofolate reductase type III [H]
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MSSPGVSSRLSIVLIVAVADNGVIGRDNAIPWRLKSDLQRFKQLTLNKPIIMGRKTYQSIGRPLPGRTNIVVTRDPTFHA DGVVVVPSFDAAEQVACGDAMRRFATEIAVIGGAEIYAHWLPRATRIELTEVHASPPGDATFPALDPSQWEETARTHHAA GPQDSADVSYVTYRRCTAR
Sequences:
>Translated_179_residues MSSPGVSSRLSIVLIVAVADNGVIGRDNAIPWRLKSDLQRFKQLTLNKPIIMGRKTYQSIGRPLPGRTNIVVTRDPTFHA DGVVVVPSFDAAEQVACGDAMRRFATEIAVIGGAEIYAHWLPRATRIELTEVHASPPGDATFPALDPSQWEETARTHHAA GPQDSADVSYVTYRRCTAR >Mature_178_residues SSPGVSSRLSIVLIVAVADNGVIGRDNAIPWRLKSDLQRFKQLTLNKPIIMGRKTYQSIGRPLPGRTNIVVTRDPTFHAD GVVVVPSFDAAEQVACGDAMRRFATEIAVIGGAEIYAHWLPRATRIELTEVHASPPGDATFPALDPSQWEETARTHHAAG PQDSADVSYVTYRRCTAR
Specific function: Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis [H]
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DHFR (dihydrofolate reductase) domain [H]
Homologues:
Organism=Escherichia coli, GI1786233, Length=164, Percent_Identity=45.1219512195122, Blast_Score=133, Evalue=5e-33, Organism=Caenorhabditis elegans, GI17505899, Length=176, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324810, Length=175, Percent_Identity=32.5714285714286, Blast_Score=67, Evalue=1e-12, Organism=Drosophila melanogaster, GI116008026, Length=175, Percent_Identity=29.7142857142857, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24647458, Length=175, Percent_Identity=29.7142857142857, Blast_Score=73, Evalue=1e-13,
Paralogues:
None
Copy number: 640 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 10,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012259 - InterPro: IPR017925 - InterPro: IPR001796 [H]
Pfam domain/function: PF00186 DHFR_1 [H]
EC number: =1.5.1.3 [H]
Molecular weight: Translated: 19532; Mature: 19401
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS00075 DHFR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPGVSSRLSIVLIVAVADNGVIGRDNAIPWRLKSDLQRFKQLTLNKPIIMGRKTYQSI CCCCCCCCCEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHH GRPLPGRTNIVVTRDPTFHADGVVVVPSFDAAEQVACGDAMRRFATEIAVIGGAEIYAHW CCCCCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHH LPRATRIELTEVHASPPGDATFPALDPSQWEETARTHHAAGPQDSADVSYVTYRRCTAR CCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure SSPGVSSRLSIVLIVAVADNGVIGRDNAIPWRLKSDLQRFKQLTLNKPIIMGRKTYQSI CCCCCCCCEEEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHHHH GRPLPGRTNIVVTRDPTFHADGVVVVPSFDAAEQVACGDAMRRFATEIAVIGGAEIYAHW CCCCCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCHHHHHHH LPRATRIELTEVHASPPGDATFPALDPSQWEETARTHHAAGPQDSADVSYVTYRRCTAR CCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2840679; 6371010 [H]