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The map label for this gene is ydeL [H]

Identifier: 86748618

GI number: 86748618

Start: 1685485

End: 1686978

Strand: Direct

Name: ydeL [H]

Synonym: RPB_1493

Alternate gene names: 86748618

Gene position: 1685485-1686978 (Clockwise)

Preceding gene: 86748605

Following gene: 86748625

Centisome position: 31.61

GC content: 65.46

Gene sequence:

>1494_bases
ATGCAATCAGACGAAGACCGGCTGATGTGGAAGGAACTGCTCGGCCGCAGTGCCAAAGAGGGCGTCCAGTTGCAGGCGCA
ATTGCGCAACGCCTTCGTCGACGCCATCGTCGATGGAAATCTGCCTGCGGGGCGCAGGGTGCCGTCGAGCCGCGAACTGG
CGGCGCTCGCAGGCGTGTCGCGGACGACAGCTTCGCTGGTGCTGGAGAAACTGGCCGCGGACAGCTTCCTGGAGGCGCGC
CCGCGAGACGGCTTCTATGTGTCGTCGGCGCTGAAGCGGCGTCAGGTCACCTTCGGACGCGCGGTCGGCAACGCCGACCA
GCCCGACTGGGCCGCGCGGCTGGTCCACGCCGAGGTCGGATATCCCTGGCAGGAGCGGCCGCGAGGCTGGGAAAGCTGCA
AATATCGGTTCGTTTACGGCGAGGTGAACGCCCAGACGTTTCCGTTCACGGACTGGCGGGACGCCAGCCGGTCGGCGCTG
ACCAGTCCGGCCATCCAGCATTGGGGCCAGGACAGCGGCGGCGAAGACAGCCGGCCGCTGATCGAGCAGATCATCAACAA
GATCCTGCCGCGACGAGGCATCGCCGCCGCGGCGGACCAGGTGATGCTCACACTCGGAACGCAACACGGGCTGTATCTGA
TCGCCCAGACCCTGCTGGGCCCCGGTCTCAAGGTCGGGGTCGAGGAGCCCGGCTACATGGACGCGCGCTTCATCTTTCTC
CGCAGCGGGGCGGATCTCCTCTCCATCCCGATCGATGCATTCGGCATGACGATCGACAAGCGATCGCTCGACTGCAACTA
CCTGTATTGCACGCCGAGCCATCAGGCGCCGACCGGCGTGACGATGAGCACGGAGCGGCGTCTGTCGCTGCTCAATCAGG
CGATCGTGCAAGATCAGATCATCATTGAGGACGATTACGAGCCCGAACTGAAATATGACGGCGCCGCCGCGGCGGCGCTG
AAGGCGATGGATCGGTCGGGGCGCGTGATCTATCTCAGCAGCCTGTCGAAGCTGGTCTGCCCCGGCTTGCGGATCGGCTA
TCTGGTCGGCCCAGAAACGCTGATCGCCGAACTCAAATCGCTGCGACGCTTGATGCTGCGGCAGTTGCCGGGCAACAATC
TGGCCAGCGCCGCGCAGTTCATTCGGCAGGGGCACTACGACCGCTTGATGACCGAGATGCGGCGCTCACTCGAGACGAAG
GCCAAGCTGATCGTCGATACGCTGCGCAGGGAACTGCCGATCGCTGAGTACGAGGCGCCGACCGGCGGCTCCGCGATCTG
GATGCGGATCCCGGGATGCCGCAGCCCGTCGAAGCTGCGCGCCGCCTGCTTCGATGCCGGAGTTCTGATCGATCCGGTCG
AGCCCTACTTTGCCCTGGCGCCGAAGGAGACCTGGGTGCGCCTCAACTTCGCGTCGATGCCGAGACAACTGGTGGAAGCC
GGCACGGTGGCGTTCGCCCGGACTGTGAGCAAGCTGATCCGGAGCGGCGGGTAG

Upstream 100 bases:

>100_bases
CAGGATCCGTCTGAGATACCTACGTGGCCCTATCATGCGGACGGATGTTGCTGTTTCATAAAGCCAGCACCTCCTTTCGG
TAAGGCCAGCAGGAAACCCG

Downstream 100 bases:

>100_bases
CGCGCCGTGCCCTCACTGCGGACCCTGATGTTCCGCAGCGAGGGCGTGCGCGACTGGACTAGTCGTCGTCCTGCAGCGCC
GATTTCACCGCTTGGGTGAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 497; Mature: 497

Protein sequence:

>497_residues
MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSSRELAALAGVSRTTASLVLEKLAADSFLEAR
PRDGFYVSSALKRRQVTFGRAVGNADQPDWAARLVHAEVGYPWQERPRGWESCKYRFVYGEVNAQTFPFTDWRDASRSAL
TSPAIQHWGQDSGGEDSRPLIEQIINKILPRRGIAAAADQVMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFL
RSGADLLSIPIDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQIIIEDDYEPELKYDGAAAAAL
KAMDRSGRVIYLSSLSKLVCPGLRIGYLVGPETLIAELKSLRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETK
AKLIVDTLRRELPIAEYEAPTGGSAIWMRIPGCRSPSKLRAACFDAGVLIDPVEPYFALAPKETWVRLNFASMPRQLVEA
GTVAFARTVSKLIRSGG

Sequences:

>Translated_497_residues
MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSSRELAALAGVSRTTASLVLEKLAADSFLEAR
PRDGFYVSSALKRRQVTFGRAVGNADQPDWAARLVHAEVGYPWQERPRGWESCKYRFVYGEVNAQTFPFTDWRDASRSAL
TSPAIQHWGQDSGGEDSRPLIEQIINKILPRRGIAAAADQVMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFL
RSGADLLSIPIDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQIIIEDDYEPELKYDGAAAAAL
KAMDRSGRVIYLSSLSKLVCPGLRIGYLVGPETLIAELKSLRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETK
AKLIVDTLRRELPIAEYEAPTGGSAIWMRIPGCRSPSKLRAACFDAGVLIDPVEPYFALAPKETWVRLNFASMPRQLVEA
GTVAFARTVSKLIRSGG
>Mature_497_residues
MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSSRELAALAGVSRTTASLVLEKLAADSFLEAR
PRDGFYVSSALKRRQVTFGRAVGNADQPDWAARLVHAEVGYPWQERPRGWESCKYRFVYGEVNAQTFPFTDWRDASRSAL
TSPAIQHWGQDSGGEDSRPLIEQIINKILPRRGIAAAADQVMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFL
RSGADLLSIPIDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQIIIEDDYEPELKYDGAAAAAL
KAMDRSGRVIYLSSLSKLVCPGLRIGYLVGPETLIAELKSLRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETK
AKLIVDTLRRELPIAEYEAPTGGSAIWMRIPGCRSPSKLRAACFDAGVLIDPVEPYFALAPKETWVRLNFASMPRQLVEA
GTVAFARTVSKLIRSGG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=323, Percent_Identity=25.3869969040248, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI33469970, Length=323, Percent_Identity=25.3869969040248, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI1790797, Length=422, Percent_Identity=25.8293838862559, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787710, Length=477, Percent_Identity=25.1572327044025, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54985; Mature: 54985

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSSRELAALAGVS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCH
RTTASLVLEKLAADSFLEARPRDGFYVSSALKRRQVTFGRAVGNADQPDWAARLVHAEVG
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
YPWQERPRGWESCKYRFVYGEVNAQTFPFTDWRDASRSALTSPAIQHWGQDSGGEDSRPL
CCHHHCCCCCHHCEEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHH
IEQIINKILPRRGIAAAADQVMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFL
HHHHHHHHCCCCCHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEEE
RSGADLLSIPIDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQI
ECCCCEEECCHHHHCCEEECCCCCCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHHCCE
IIEDDYEPELKYDGAAAAALKAMDRSGRVIYLSSLSKLVCPGLRIGYLVGPETLIAELKS
EEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCEEEEEECHHHHHHHHHH
LRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETKAKLIVDTLRRELPIAEYEAP
HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
TGGSAIWMRIPGCRSPSKLRAACFDAGVLIDPVEPYFALAPKETWVRLNFASMPRQLVEA
CCCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCEEECCCCCEEEEEHHHHHHHHHHH
GTVAFARTVSKLIRSGG
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSSRELAALAGVS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCH
RTTASLVLEKLAADSFLEARPRDGFYVSSALKRRQVTFGRAVGNADQPDWAARLVHAEVG
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
YPWQERPRGWESCKYRFVYGEVNAQTFPFTDWRDASRSALTSPAIQHWGQDSGGEDSRPL
CCHHHCCCCCHHCEEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHCCCCCCCCCCHHH
IEQIINKILPRRGIAAAADQVMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFL
HHHHHHHHCCCCCHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEECCCCCCCCCEEEEEE
RSGADLLSIPIDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQI
ECCCCEEECCHHHHCCEEECCCCCCCEEEECCCCCCCCCCEECHHHHHHHHHHHHHHCCE
IIEDDYEPELKYDGAAAAALKAMDRSGRVIYLSSLSKLVCPGLRIGYLVGPETLIAELKS
EEECCCCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHCCCCEEEEEECHHHHHHHHHH
LRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETKAKLIVDTLRRELPIAEYEAP
HHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
TGGSAIWMRIPGCRSPSKLRAACFDAGVLIDPVEPYFALAPKETWVRLNFASMPRQLVEA
CCCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCEEECCCCCEEEEEHHHHHHHHHHH
GTVAFARTVSKLIRSGG
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]