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The map label for this gene is ycbK [H]

Identifier: 86748552

GI number: 86748552

Start: 1613705

End: 1615294

Strand: Reverse

Name: ycbK [H]

Synonym: RPB_1427

Alternate gene names: 86748552

Gene position: 1615294-1613705 (Counterclockwise)

Preceding gene: 86748553

Following gene: 86748549

Centisome position: 30.3

GC content: 68.36

Gene sequence:

>1590_bases
GTGCTGGCTGGACTTGCGCGCCGTCTGAAATCACTGTCGCTGCCCAAACTCGGCTACGGCGCCGCGCTGACCTCGGCCAT
TTTGCTGGTCGGCGCAGGGACGGTACATGACGCCTCCGCCGTCGGCGACAGCCGCACGCTCTCGTTCCACCACACCCATT
CCGGCGAAGACCTCACCGTCACCTTCAAGCGCAACGGCCGCTACGACGAAGAGGCGCTCGGCAAGCTCAATCATTTCCTG
CGGGACTGGCGCAGCCAGGACAAGACCGCGATGGACAGGTCGCTGTTCGACATCCTCTGGGAAGTCTACCGCGACGTCGA
CGGCAAGCAGCCGATCCAGATCATCTCCGCCTACCGTTCCCCCGCCACCAACGCCATGCTCCGCCGCCGCTCCTCCGGCG
TGGCCCGTCACAGCCAGCACACCATGGGCCAGGCGATGGACTTCTTCATCCCGGGCGTCGCCCTGGAAAAGATCCGCTTC
GCCGGGCTCAGGCTGCAACGCGGCGGCGTCGGCTTCTATCCGACCTCCGGCTCGCCCTTCGTCCATCTCGATACCGGCCG
TGTCCGCCACTGGCCGCGGATGTCCTCCGATCAGCTCGCCCGGGTGTTCCCGGATGGCCGCACCGTGCATCTGCCGACCG
ACGGCCGACCGCTGCCGGGCTATGAACTGGCGCTGGCCGACATTCGCAAGCGCGGCGACGGCCGCGACGCCGCGCCGTCC
AAGAGCAATTTCCTGACCGCCCTATTCCGCGGCAAGTCTGCGGACGACGAAGACGAAAGCGCCGGCGCTGCCACGACGCC
CGCAGCCGTCAGCGCCAGGCCGGCCGAAGCCAAACTCGTGAGCGCCGAGCCGGTCCCGATGCCGCGCGCCAAGCCAGCGC
TGCCGATCCAGGTCGCATCCGCCGACACCAGCGTGCCGCTGGCCAAGCCGGCGAAACAGACCGCCAAATCCGACAGCAGG
CCCGAGACCAAGTCCGAACCGAAGGCGCTGACACCGGCCGACATCATCAATGCCCGCGGTTTCTGGGACGACATCCCGGT
GGCTCCGAAGCAGGCCACCCCGCAACAGGTCGCGGCGATCAGCGCTCGTCAGGCACTCGAAGCCGCCGACCCGCAATCGC
CGATGAATGCAATGGCGTTCGCCGCCAGTTCGACCGAGAAGGTCTCCAAGCCGCAGCCGGCCCACCGGCATGTCGTGACC
GCGAGCGCCCCGATCCCGACGGCCGCCCGGCCGTCGTCACTGGCGCGGCATCCGGTGGTCTCGGCCAAGGTCGACACGGT
GGTCGGCAAGACAGCGCAGGCCAAGGGCGGCCTGGTCTCCAATTCCGCCCGCATTACCGCCGCCGGCAGCCGCGACAGCG
ACGTCTGGATGCGCGCGATGATCCTGATGCCGAGCGCCGTCACGACCGGCGCCACGGCGATCGGCGATGCCGACATGACG
CTTCTCACCAAGCATTTCGTCAAGCCCGAGACCGCCGTGACGATGACGTTCTGCGACGATCCCCAGCCCGGCCTCTATGC
GGATGCGTTCACCGGCCCGGCCGTGACCCAGGTGTCGACCACCAGCTTCACCACGGCCTCGCTGCGCTGA

Upstream 100 bases:

>100_bases
GTCGCGGTCGGTAACGCTCCGTGAACGATGCAATCACCTGTCTCACGCATTCGGGGTTGAGACAGGCTCCCGTTCGGTCG
TCCTTCTGGTGGGGCTTTTC

Downstream 100 bases:

>100_bases
ACGCACGGCGGGCGCTGTTGTTGTCGGCGTAGAACGAAGCGCATCGCGTCAGCCTCACCCTCCCCCGTCATCGCCCGCGC
AGGCGGGCGACCCGGTATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MLAGLARRLKSLSLPKLGYGAALTSAILLVGAGTVHDASAVGDSRTLSFHHTHSGEDLTVTFKRNGRYDEEALGKLNHFL
RDWRSQDKTAMDRSLFDILWEVYRDVDGKQPIQIISAYRSPATNAMLRRRSSGVARHSQHTMGQAMDFFIPGVALEKIRF
AGLRLQRGGVGFYPTSGSPFVHLDTGRVRHWPRMSSDQLARVFPDGRTVHLPTDGRPLPGYELALADIRKRGDGRDAAPS
KSNFLTALFRGKSADDEDESAGAATTPAAVSARPAEAKLVSAEPVPMPRAKPALPIQVASADTSVPLAKPAKQTAKSDSR
PETKSEPKALTPADIINARGFWDDIPVAPKQATPQQVAAISARQALEAADPQSPMNAMAFAASSTEKVSKPQPAHRHVVT
ASAPIPTAARPSSLARHPVVSAKVDTVVGKTAQAKGGLVSNSARITAAGSRDSDVWMRAMILMPSAVTTGATAIGDADMT
LLTKHFVKPETAVTMTFCDDPQPGLYADAFTGPAVTQVSTTSFTTASLR

Sequences:

>Translated_529_residues
MLAGLARRLKSLSLPKLGYGAALTSAILLVGAGTVHDASAVGDSRTLSFHHTHSGEDLTVTFKRNGRYDEEALGKLNHFL
RDWRSQDKTAMDRSLFDILWEVYRDVDGKQPIQIISAYRSPATNAMLRRRSSGVARHSQHTMGQAMDFFIPGVALEKIRF
AGLRLQRGGVGFYPTSGSPFVHLDTGRVRHWPRMSSDQLARVFPDGRTVHLPTDGRPLPGYELALADIRKRGDGRDAAPS
KSNFLTALFRGKSADDEDESAGAATTPAAVSARPAEAKLVSAEPVPMPRAKPALPIQVASADTSVPLAKPAKQTAKSDSR
PETKSEPKALTPADIINARGFWDDIPVAPKQATPQQVAAISARQALEAADPQSPMNAMAFAASSTEKVSKPQPAHRHVVT
ASAPIPTAARPSSLARHPVVSAKVDTVVGKTAQAKGGLVSNSARITAAGSRDSDVWMRAMILMPSAVTTGATAIGDADMT
LLTKHFVKPETAVTMTFCDDPQPGLYADAFTGPAVTQVSTTSFTTASLR
>Mature_529_residues
MLAGLARRLKSLSLPKLGYGAALTSAILLVGAGTVHDASAVGDSRTLSFHHTHSGEDLTVTFKRNGRYDEEALGKLNHFL
RDWRSQDKTAMDRSLFDILWEVYRDVDGKQPIQIISAYRSPATNAMLRRRSSGVARHSQHTMGQAMDFFIPGVALEKIRF
AGLRLQRGGVGFYPTSGSPFVHLDTGRVRHWPRMSSDQLARVFPDGRTVHLPTDGRPLPGYELALADIRKRGDGRDAAPS
KSNFLTALFRGKSADDEDESAGAATTPAAVSARPAEAKLVSAEPVPMPRAKPALPIQVASADTSVPLAKPAKQTAKSDSR
PETKSEPKALTPADIINARGFWDDIPVAPKQATPQQVAAISARQALEAADPQSPMNAMAFAASSTEKVSKPQPAHRHVVT
ASAPIPTAARPSSLARHPVVSAKVDTVVGKTAQAKGGLVSNSARITAAGSRDSDVWMRAMILMPSAVTTGATAIGDADMT
LLTKHFVKPETAVTMTFCDDPQPGLYADAFTGPAVTQVSTTSFTTASLR

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=147, Percent_Identity=48.2993197278912, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 56391; Mature: 56391

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAGLARRLKSLSLPKLGYGAALTSAILLVGAGTVHDASAVGDSRTLSFHHTHSGEDLTV
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCCEEEE
TFKRNGRYDEEALGKLNHFLRDWRSQDKTAMDRSLFDILWEVYRDVDGKQPIQIISAYRS
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
PATNAMLRRRSSGVARHSQHTMGQAMDFFIPGVALEKIRFAGLRLQRGGVGFYPTSGSPF
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEECCCCEEECCCCCCE
VHLDTGRVRHWPRMSSDQLARVFPDGRTVHLPTDGRPLPGYELALADIRKRGDGRDAAPS
EEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCC
KSNFLTALFRGKSADDEDESAGAATTPAAVSARPAEAKLVSAEPVPMPRAKPALPIQVAS
CHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEC
ADTSVPLAKPAKQTAKSDSRPETKSEPKALTPADIINARGFWDDIPVAPKQATPQQVAAI
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
SARQALEAADPQSPMNAMAFAASSTEKVSKPQPAHRHVVTASAPIPTAARPSSLARHPVV
HHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCC
SAKVDTVVGKTAQAKGGLVSNSARITAAGSRDSDVWMRAMILMPSAVTTGATAIGDADMT
HHHHHHHHCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHH
LLTKHFVKPETAVTMTFCDDPQPGLYADAFTGPAVTQVSTTSFTTASLR
HHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCEEEEECCCEEEECCC
>Mature Secondary Structure
MLAGLARRLKSLSLPKLGYGAALTSAILLVGAGTVHDASAVGDSRTLSFHHTHSGEDLTV
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEECCCCCEEEE
TFKRNGRYDEEALGKLNHFLRDWRSQDKTAMDRSLFDILWEVYRDVDGKQPIQIISAYRS
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
PATNAMLRRRSSGVARHSQHTMGQAMDFFIPGVALEKIRFAGLRLQRGGVGFYPTSGSPF
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCEEEECCCCEEECCCCCCE
VHLDTGRVRHWPRMSSDQLARVFPDGRTVHLPTDGRPLPGYELALADIRKRGDGRDAAPS
EEECCCCCCCCCCCCHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCC
KSNFLTALFRGKSADDEDESAGAATTPAAVSARPAEAKLVSAEPVPMPRAKPALPIQVAS
CHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEC
ADTSVPLAKPAKQTAKSDSRPETKSEPKALTPADIINARGFWDDIPVAPKQATPQQVAAI
CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
SARQALEAADPQSPMNAMAFAASSTEKVSKPQPAHRHVVTASAPIPTAARPSSLARHPVV
HHHHHHHHCCCCCCHHHHHHHCCCHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCC
SAKVDTVVGKTAQAKGGLVSNSARITAAGSRDSDVWMRAMILMPSAVTTGATAIGDADMT
HHHHHHHHCCCCCCCCCEEECCCEEEECCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHH
LLTKHFVKPETAVTMTFCDDPQPGLYADAFTGPAVTQVSTTSFTTASLR
HHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCCEEEEECCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]