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The map label for this gene is ycbB [H]

Identifier: 86748553

GI number: 86748553

Start: 1615560

End: 1617716

Strand: Reverse

Name: ycbB [H]

Synonym: RPB_1428

Alternate gene names: 86748553

Gene position: 1617716-1615560 (Counterclockwise)

Preceding gene: 86748554

Following gene: 86748552

Centisome position: 30.34

GC content: 67.45

Gene sequence:

>2157_bases
ATGCGAGATCACTCGACTGGCCGCCGCGGATTCGAAGGCGTGCTGATGGCCGTTGCGGCGACGTTCCTGACCGTTTCGGC
GAGCTCGGTGATCGCGCAATCGGCTCCGAAGACCCCCGCCGACCTCGCCATCGATGCCGCCGTCCCGGTGCCCCAGCCGG
TCGATCTGCCGCCGCCTTCGATCGGCGATTTCAAGCTCGATTCCATCGCAGCCCCGGCGACCGCGCCGACGGCGTCGTCG
ACTGAACCCAGCCCCGAGCCCAAAGCCGAAGCCAAGGTCGAGCCCAAGGTCGAGCCCAAGGCCGACAGCGCCGCGGCGCC
CGCGCCGACGCCCGCCGGGCCCCCGGCTGCCGCCGCCGCAACCGCGCCAGCCGCCGAAGCGGTCAAGGAGCAGGCCACCA
AGGACCAGCCCGCCGAACCGCAGACGGCTGCGAGCACAGTGCCGGCCGCTGATCAGCCGGTTGCCGACAAGGTCCGCGAG
ACGCTGGCGACCAAGGCGTCGCGCTATTTCGAGCGCAAGGTCGAGCGGGCCGCCGTCGAGAAATTCTATGAAGCGCGCGA
CTACGCGCCGGTGTGGACGAAGGCCGGCGCGCTGACCGCGGCCGGCAAAGGCGTGATCGCGCGGCTGAAGGACGCCGCCG
CCGACGGCCTCGACCCGGACGACTATCCGGTGCCGGATTTCGCCGCCGCGCCGTCGCCGACGACGCTTGCCGAGGCCGAG
CTGCGGCTCACCGAGAGCATGATGGATTATGCGCGCCAGGCGCAGAGCGGCCGGATGCACTGGTCGCAGGCCGGTTCGGA
CATCCAATATCCGGAGCATCCGATCGATCCGGCCGACGTTCTCGCCAGCGTCACCACCGCCAAGGACGCCTCGGCGGCGC
TCGGGAGCTACAACCCGCCGCACAGGCTCTACAAGGAGCTGAAGAAGAAGCTCGCCGAATTGCGCGGCGAAAGTGACGGC
CCGGTGCTCAAGATCGCCGAAGGCGAGACGCTGAAATTCGTCCCGGCGCGCAAGAAACAGGCGGCGGTGACGATGGACGA
TCCGCGCGTGCCGCAGCTCCGCGCCAAGCTCGGCATCACCGAGGACGCCGACAGCACCACGTACGACGCCAAGGTCGCCG
AGGCGGTGCGCAAATTCCAGCGCGGCGCCGATCTGAAGCCGACCGGCATCCTCGACGACCGCACCGTGAAGGCGCTGAAC
ACGCCGAAGCGCGACCGCACCATCGACACCATCATGGTCAATATGGAGCGCTGGCGCTGGCTGCCGCGACAGCTCGGCGC
GGCGTCGCTCGGCGACGCCTATGTGATCCTCAACGTGCCGGACTACACGCTGAAACTGATGCACAACGGCGCGCAGGTCT
GGACCACCCGCGTGGTGATCGGCAAGCCGGGCAAGCACGCCACGCCACTGCTGACGGAGACGATGAAGTACATCACCGTC
AATCCGACCTGGAACGTGCCGCCGTCGATCATCAACAACGAGTACCTGCCGGCGCTGGCGCAGGATCCGACCGTGCTGGA
CCGCATGGGCCTGAAGATGTCGCGCAACCGCGACGGCTCGATCCACATCTCGCAGCCGCCGGGCGAAGCCAACGCGCTCG
GCCGCATCCGCTTCAACTTCCCGAACAAATTCCTGGTGTATCAGCACGACACGCCGGACAAGAACCTGTTCGCCCGTGAG
GAGCGCGCCTTCAGCCACGGCTGCATGCGGGTGCAAAATCCGGATCAATACGCCGCGGCGCTGCTGAACATCGCCATGCC
GGACAAGGACTACACCCCGGCGAAGATCCGCTCGATGTACGGCCGCAGCGAGGTCAATCTGAACTTCCCGACGCCGATCC
CGGTCAACATCACCTACCAGACGGCCTTCGTGGACGACGACGGCAAGCTGCAGCTCCGCAAGGACGTCTACGGTCGCGAT
GCCAGGATGCTGGCGCTGCTGAAAAACGACAAAGGCAAGAATCTCGAAGCCGTGGTCGCCCATGCGCAGCCGAACTACAG
CCGCCCGACCAACGTGCCGCCCGGCGTGAACATCGCCGGTGACTACACCGGCTCGTCGCAATCGTCCGGGCTGAACTTCT
TCGAACGGCTGTTCGGCGGTCCTCCGGCACCGCAGCCGCAGCCGATGCGCCGCACCCAGCAGCGCTATACGCGCTGA

Upstream 100 bases:

>100_bases
AGTTTGAGACGCAATGTCGCTCGTCGGGCGGGACCGCCGAGAGCACAACATCAAGAACACGAACTGCCCCACACGGGCAG
CTTCTCCAAGGGGTAGATGA

Downstream 100 bases:

>100_bases
CCCGAGGTTCCCGCGTTAAGACGAAAAACTGAAATGGAACAACGGCTCGTTTCCCGATGAGCCGCTTCCATTAACCATTG
TCCATCAGGATGCCGGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MRDHSTGRRGFEGVLMAVAATFLTVSASSVIAQSAPKTPADLAIDAAVPVPQPVDLPPPSIGDFKLDSIAAPATAPTASS
TEPSPEPKAEAKVEPKVEPKADSAAAPAPTPAGPPAAAAATAPAAEAVKEQATKDQPAEPQTAASTVPAADQPVADKVRE
TLATKASRYFERKVERAAVEKFYEARDYAPVWTKAGALTAAGKGVIARLKDAAADGLDPDDYPVPDFAAAPSPTTLAEAE
LRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPPHRLYKELKKKLAELRGESDG
PVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGITEDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALN
TPKRDRTIDTIMVNMERWRWLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYITV
NPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFARE
ERAFSHGCMRVQNPDQYAAALLNIAMPDKDYTPAKIRSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRD
ARMLALLKNDKGKNLEAVVAHAQPNYSRPTNVPPGVNIAGDYTGSSQSSGLNFFERLFGGPPAPQPQPMRRTQQRYTR

Sequences:

>Translated_718_residues
MRDHSTGRRGFEGVLMAVAATFLTVSASSVIAQSAPKTPADLAIDAAVPVPQPVDLPPPSIGDFKLDSIAAPATAPTASS
TEPSPEPKAEAKVEPKVEPKADSAAAPAPTPAGPPAAAAATAPAAEAVKEQATKDQPAEPQTAASTVPAADQPVADKVRE
TLATKASRYFERKVERAAVEKFYEARDYAPVWTKAGALTAAGKGVIARLKDAAADGLDPDDYPVPDFAAAPSPTTLAEAE
LRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPPHRLYKELKKKLAELRGESDG
PVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGITEDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALN
TPKRDRTIDTIMVNMERWRWLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYITV
NPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFARE
ERAFSHGCMRVQNPDQYAAALLNIAMPDKDYTPAKIRSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRD
ARMLALLKNDKGKNLEAVVAHAQPNYSRPTNVPPGVNIAGDYTGSSQSSGLNFFERLFGGPPAPQPQPMRRTQQRYTR
>Mature_718_residues
MRDHSTGRRGFEGVLMAVAATFLTVSASSVIAQSAPKTPADLAIDAAVPVPQPVDLPPPSIGDFKLDSIAAPATAPTASS
TEPSPEPKAEAKVEPKVEPKADSAAAPAPTPAGPPAAAAATAPAAEAVKEQATKDQPAEPQTAASTVPAADQPVADKVRE
TLATKASRYFERKVERAAVEKFYEARDYAPVWTKAGALTAAGKGVIARLKDAAADGLDPDDYPVPDFAAAPSPTTLAEAE
LRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPPHRLYKELKKKLAELRGESDG
PVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGITEDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALN
TPKRDRTIDTIMVNMERWRWLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYITV
NPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFARE
ERAFSHGCMRVQNPDQYAAALLNIAMPDKDYTPAKIRSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRD
ARMLALLKNDKGKNLEAVVAHAQPNYSRPTNVPPGVNIAGDYTGSSQSSGLNFFERLFGGPPAPQPQPMRRTQQRYTR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=293, Percent_Identity=32.7645051194539, Blast_Score=167, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 77869; Mature: 77869

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDHSTGRRGFEGVLMAVAATFLTVSASSVIAQSAPKTPADLAIDAAVPVPQPVDLPPPS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCCCC
IGDFKLDSIAAPATAPTASSTEPSPEPKAEAKVEPKVEPKADSAAAPAPTPAGPPAAAAA
CCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TAPAAEAVKEQATKDQPAEPQTAASTVPAADQPVADKVRETLATKASRYFERKVERAAVE
CCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFYEARDYAPVWTKAGALTAAGKGVIARLKDAAADGLDPDDYPVPDFAAAPSPTTLAEAE
HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
LRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPP
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH
HRLYKELKKKLAELRGESDGPVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGIT
HHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCEEECCCCCCCHHHHHCCCC
EDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPKRDRTIDTIMVNMERWRW
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHEEEHHHHHH
LPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYITV
HHHHCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCCCCHHHHHCEEEEEE
NPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRIRFNF
CCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECC
PNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDQYAAALLNIAMPDKDYTPAKIRSMY
CCEEEEEECCCCCCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
GRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRDARMLALLKNDKGKNLEAVVA
CCCEEEEECCCCCCEEEEEEEEEECCCCCEEEEHHHCCCCCEEEEEEECCCCCCEEEEEE
HAQPNYSRPTNVPPGVNIAGDYTGSSQSSGLNFFERLFGGPPAPQPQPMRRTQQRYTR
ECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRDHSTGRRGFEGVLMAVAATFLTVSASSVIAQSAPKTPADLAIDAAVPVPQPVDLPPPS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCCCCC
IGDFKLDSIAAPATAPTASSTEPSPEPKAEAKVEPKVEPKADSAAAPAPTPAGPPAAAAA
CCCEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
TAPAAEAVKEQATKDQPAEPQTAASTVPAADQPVADKVRETLATKASRYFERKVERAAVE
CCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KFYEARDYAPVWTKAGALTAAGKGVIARLKDAAADGLDPDDYPVPDFAAAPSPTTLAEAE
HHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
LRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLASVTTAKDASAALGSYNPP
HHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH
HRLYKELKKKLAELRGESDGPVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGIT
HHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCCCCEEECCCCCCCHHHHHCCCC
EDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPKRDRTIDTIMVNMERWRW
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHEEEHHHHHH
LPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTETMKYITV
HHHHCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCCCCHHHHHCEEEEEE
NPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHISQPPGEANALGRIRFNF
CCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECC
PNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDQYAAALLNIAMPDKDYTPAKIRSMY
CCEEEEEECCCCCCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
GRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRDARMLALLKNDKGKNLEAVVA
CCCEEEEECCCCCCEEEEEEEEEECCCCCEEEEHHHCCCCCEEEEEEECCCCCCEEEEEE
HAQPNYSRPTNVPPGVNIAGDYTGSSQSSGLNFFERLFGGPPAPQPQPMRRTQQRYTR
ECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]