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The map label for this gene is clpS [H]

Identifier: 86748339

GI number: 86748339

Start: 1388419

End: 1388724

Strand: Reverse

Name: clpS [H]

Synonym: RPB_1214

Alternate gene names: 86748339

Gene position: 1388724-1388419 (Counterclockwise)

Preceding gene: 86748341

Following gene: 86748335

Centisome position: 26.05

GC content: 62.42

Gene sequence:

>306_bases
ATGAGCAACGTCGTCACCAAGCCGACAGCCAAGGCCAAGCCGAAGCTGGAACGGCCGAAACTGTACAAGGTGATTCTCGT
CAACGACGACTTCACGCCGCGCGATTTCGTGGTGATGATCCTCAAGTCCGAGTTCCGCATGACCGAGGAACAGGCGTACA
AAGTCATGCTGACCGCGCATCAGCGCGGCGTCTGCGTGGTGGCGGTGTTCACCAAGGACATCGCCGAGACCAAGGCCACC
CGCGCCACCGACGCCGGCCGCGCCAAGGGCTATCCGCTGCTGTTCACCACCGAGCCGGAGGAGTAG

Upstream 100 bases:

>100_bases
TGCCGCGCTGCACTGAAATCGCGCAGCCGACCGGTCGGCCGGCGGTTTCGCGATTGCGCGCGGGGTTGTAAACTGCGCCG
GCACCAACCGGTCGAACCGC

Downstream 100 bases:

>100_bases
CGGCAGTCGTCACCTCTCCCCGCGCGCGGGGAGAGGTCGGATCAGCGCGCAGCGATGATCCGGGTGAGGGGGCGTCTCCG
CGAGGCCGAGAGTCAGAGAC

Product: ATP-dependent Clp protease adaptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAHQRGVCVVAVFTKDIAETKAT
RATDAGRAKGYPLLFTTEPEE

Sequences:

>Translated_101_residues
MSNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAHQRGVCVVAVFTKDIAETKAT
RATDAGRAKGYPLLFTTEPEE
>Mature_100_residues
SNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAHQRGVCVVAVFTKDIAETKATR
ATDAGRAKGYPLLFTTEPEE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation [H]

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family [H]

Homologues:

Organism=Escherichia coli, GI1787108, Length=88, Percent_Identity=42.0454545454545, Blast_Score=76, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719 [H]

Pfam domain/function: PF02617 ClpS [H]

EC number: NA

Molecular weight: Translated: 11421; Mature: 11290

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAH
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHEEEEEECCCCCCCCHHHEEEEEEEC
QRGVCVVAVFTKDIAETKATRATDAGRAKGYPLLFTTEPEE
CCCEEEEEEECCHHHHHHHCCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure 
SNVVTKPTAKAKPKLERPKLYKVILVNDDFTPRDFVVMILKSEFRMTEEQAYKVMLTAH
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHEEEEEECCCCCCCCHHHEEEEEEEC
QRGVCVVAVFTKDIAETKATRATDAGRAKGYPLLFTTEPEE
CCCEEEEEEECCHHHHHHHCCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA