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The map label for this gene is virS [H]

Identifier: 86748259

GI number: 86748259

Start: 1304221

End: 1305330

Strand: Direct

Name: virS [H]

Synonym: RPB_1134

Alternate gene names: 86748259

Gene position: 1304221-1305330 (Clockwise)

Preceding gene: 86748255

Following gene: 86748266

Centisome position: 24.46

GC content: 66.67

Gene sequence:

>1110_bases
ATGCGCCTTCGGCGGGTGGTGCGGTTTTTGCTTCGTGATCCCGGTGTTTCCTTTGGATCGGTGGACATGTCTGCTTCGGG
AACCATCGCCTGCGGCCCTGTGCAGCAACTTCTGGTAGCGCTCGCTCGGTCGAGGCCGGAATCCGCGGGAATCAATGCCC
GCGTGGGGATTTCACGCGCGACACTCGACGATCCGTCCGGGATGCTGCCGCTGGCGGCGTTCACGTCGATGCTCGAGGCG
GCTGCGCATGAAAGCGGCAATCGCACCCTTGGGATCGAGCTCGGCCGCGACTTCAAGCTCGCGGCGCTGGGGCCGATCAG
CGATCTGATGCGGACTGCCCAGACCGTGGGCGACGCGCTGGAGAGCTTCAGTGGCTTCTTCGCCAGCATCCAGACCAGCA
CGCGGACGACGCTGTCGGTCAGCGACGGCATTGCGCGGCTGTCCTATGCGATCGAGGATCCGGCGATCCGGTTTCGCGAG
CAGGACGCCGGCTTCTCGCTGGCGATCGAATATTCGATGCTGGCCGGATTTCTCGGTCCGGCGTGGCGGGCGAGCGGCGT
CGAATTCGAGCACGCGGCCGGGGATGATCTGCCGTTCTATCAGCAGCATTTCGACTGCCCACTGCGGTTCGGACGGCGCG
AAAACGCGTTGCTGTTCCAGGCGCGGTGCCTCGACGTGCCGCTGCAGCAGGCGGACCGCAACCTGCACGCGCGGCTCCGC
GCCGATCTCGCGGAGGTGATCCAGCGGCGGGCGACGCGGCTCGATCTGGTCCGCGGCATCGAGGCGTGGATCGCGGCCTC
GCTGTGCCGGTCGGTCGCGACCGATATCGAGGTCGTCGCCTGTGATTTCGGCATGAGCACGCGGTCGTTCCAGCGCAGGC
TCGCCGACCACGGCGTCAACTATCTCGACATCCGCAACCGGGTCCGCTCGCATATCGCCAAATGCATGCTGGCCGAGACC
GGCGCTCCCGTGACGTCGATCGCGCTGCAACTCGGCTACAGCGAGACCAGCGCGTTCTCGCGCGGGTTCAAGAGCCAGGT
AGGCGAGACCCCGGTCGAGTTTCGCAAGCGTCGGCGTGGTATTGACCCTGCCGCGGCCGCTGCGGCGTGA

Upstream 100 bases:

>100_bases
CCACGAGCCTCCGGTGAGCGCGGATTCGCGTTACTGTTGAAATGAAGCGCCGCCGGCTTGTGTAGTGCTGCTGATCGATG
CGCTGCTGGTGGCACAGGGC

Downstream 100 bases:

>100_bases
ACGCGGAGCGTCGAATGCCGAGCGACCAGAATTGCTGTGAGCAGAGGCCTCAACTTGCCACAGCGTCATCCTGAGGCGCA
CGCCGGGCCGCGCTTTGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAGINARVGISRATLDDPSGMLPLAAFTSMLEA
AAHESGNRTLGIELGRDFKLAALGPISDLMRTAQTVGDALESFSGFFASIQTSTRTTLSVSDGIARLSYAIEDPAIRFRE
QDAGFSLAIEYSMLAGFLGPAWRASGVEFEHAAGDDLPFYQQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLR
ADLAEVIQRRATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVNYLDIRNRVRSHIAKCMLAET
GAPVTSIALQLGYSETSAFSRGFKSQVGETPVEFRKRRRGIDPAAAAAA

Sequences:

>Translated_369_residues
MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAGINARVGISRATLDDPSGMLPLAAFTSMLEA
AAHESGNRTLGIELGRDFKLAALGPISDLMRTAQTVGDALESFSGFFASIQTSTRTTLSVSDGIARLSYAIEDPAIRFRE
QDAGFSLAIEYSMLAGFLGPAWRASGVEFEHAAGDDLPFYQQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLR
ADLAEVIQRRATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVNYLDIRNRVRSHIAKCMLAET
GAPVTSIALQLGYSETSAFSRGFKSQVGETPVEFRKRRRGIDPAAAAAA
>Mature_369_residues
MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAGINARVGISRATLDDPSGMLPLAAFTSMLEA
AAHESGNRTLGIELGRDFKLAALGPISDLMRTAQTVGDALESFSGFFASIQTSTRTTLSVSDGIARLSYAIEDPAIRFRE
QDAGFSLAIEYSMLAGFLGPAWRASGVEFEHAAGDDLPFYQQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLR
ADLAEVIQRRATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVNYLDIRNRVRSHIAKCMLAET
GAPVTSIALQLGYSETSAFSRGFKSQVGETPVEFRKRRRGIDPAAAAAA

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 40155; Mature: 40155

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAGINARVGISRA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCEEECCCCC
TLDDPSGMLPLAAFTSMLEAAAHESGNRTLGIELGRDFKLAALGPISDLMRTAQTVGDAL
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHH
ESFSGFFASIQTSTRTTLSVSDGIARLSYAIEDPAIRFREQDAGFSLAIEYSMLAGFLGP
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCHHHEECCCCCEEEEEHHHHHHHHHCC
AWRASGVEFEHAAGDDLPFYQQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLR
HHHCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEHHHHCCCHHHHCHHHHHHHH
ADLAEVIQRRATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
YLDIRNRVRSHIAKCMLAETGAPVTSIALQLGYSETSAFSRGFKSQVGETPVEFRKRRRG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
IDPAAAAAA
CCHHHHCCC
>Mature Secondary Structure
MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAGINARVGISRA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCEEECCCCC
TLDDPSGMLPLAAFTSMLEAAAHESGNRTLGIELGRDFKLAALGPISDLMRTAQTVGDAL
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHH
ESFSGFFASIQTSTRTTLSVSDGIARLSYAIEDPAIRFREQDAGFSLAIEYSMLAGFLGP
HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCHHHEECCCCCEEEEEHHHHHHHHHCC
AWRASGVEFEHAAGDDLPFYQQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLR
HHHCCCCCCCCCCCCCCCHHHHHCCCCHHCCCCCCCEEEEHHHHCCCHHHHCHHHHHHHH
ADLAEVIQRRATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCC
YLDIRNRVRSHIAKCMLAETGAPVTSIALQLGYSETSAFSRGFKSQVGETPVEFRKRRRG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
IDPAAAAAA
CCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]