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The map label for this gene is yoqW [H]

Identifier: 86748255

GI number: 86748255

Start: 1298242

End: 1299021

Strand: Direct

Name: yoqW [H]

Synonym: RPB_1130

Alternate gene names: 86748255

Gene position: 1298242-1299021 (Clockwise)

Preceding gene: 86748250

Following gene: 86748259

Centisome position: 24.35

GC content: 67.44

Gene sequence:

>780_bases
ATGTGCGGCCGCTTTGTCATGACTTCGGCACCTGCCGCGATCCGCGATGCGTTCGGCTATGCCGATCAGCCGAACTTTCC
AGCGCGCCACAATATCGCGCCCACCCAGCCGGTTCCGGTGGTGATCGTCGACGCGGGGGCGCGCCGCTTCCGCCTGATGC
GCTGGGGTTTTTTGCCGTCCTGGGCGAAGGATCCGCGAAAATTCACGCTGCTGATCAATGCCCGCGCCGAGACGCTGCTG
GAGAAGCCCGCGTTCCGGAACGCGGTCAGGCGGCGGCGCTGCCTGGTCCCCAGCGACGGCTACTATGAGTGGAAAACGGT
GGGCACACGCAAGCAGCCGTATTTCATCCATCCCGCCGGTGGCGGGCCGATCGGCTTCGCCGGCTTGTGGGAGACCTGGG
TCGGGCCGAACGGCGAAGAGCTCGACACCATCGCGATCGTCACAACGGCCGCGCGCGAGGGCATGACTGAGCTTCACGAC
CGCGTCCCGGTGACGATCGCGCCGCAGGACTACGCGGCCTGGCTCGATTGCGCCGAGGTCGACGCGGAGAGCGCCGCCGC
GCTGCTGCGCGCCCCCCTGGCCGGCACCTTCGTCTGGTATCCGGTGTCGACTGCCGTCAACCGCGTCGCCAACGACAATC
CGCAATTGATCCTGCCGATTTCGGACGAGGAGATACTCTCCGAGGCGCCGGTTGGAGCGCAGAAAAGCGCTCGGACCAGG
CCGGCCGCGAAGCCCAAGGCCGCGGCCTCCGATGATGGCGGGCAGGGGTCGCTGTTTTAG

Upstream 100 bases:

>100_bases
GGCGCTCGCTGACGGGATTGGTTGCATCGACGACATCGATGGTATTCTTGGATTAACCAAGTTAATAGGCTCTGAAGACG
CGACCTCGGAACAATGCGCA

Downstream 100 bases:

>100_bases
AGCGCTTCGTCGACTGATTGAAACGGTACCCTCTTGTCGAGGGCAGAGTCGTCATCCTGAGGTGCGCGCGTAGCGCGCCT
CGAAGGATGCTGCAGAGGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MCGRFVMTSAPAAIRDAFGYADQPNFPARHNIAPTQPVPVVIVDAGARRFRLMRWGFLPSWAKDPRKFTLLINARAETLL
EKPAFRNAVRRRRCLVPSDGYYEWKTVGTRKQPYFIHPAGGGPIGFAGLWETWVGPNGEELDTIAIVTTAAREGMTELHD
RVPVTIAPQDYAAWLDCAEVDAESAAALLRAPLAGTFVWYPVSTAVNRVANDNPQLILPISDEEILSEAPVGAQKSARTR
PAAKPKAAASDDGGQGSLF

Sequences:

>Translated_259_residues
MCGRFVMTSAPAAIRDAFGYADQPNFPARHNIAPTQPVPVVIVDAGARRFRLMRWGFLPSWAKDPRKFTLLINARAETLL
EKPAFRNAVRRRRCLVPSDGYYEWKTVGTRKQPYFIHPAGGGPIGFAGLWETWVGPNGEELDTIAIVTTAAREGMTELHD
RVPVTIAPQDYAAWLDCAEVDAESAAALLRAPLAGTFVWYPVSTAVNRVANDNPQLILPISDEEILSEAPVGAQKSARTR
PAAKPKAAASDDGGQGSLF
>Mature_259_residues
MCGRFVMTSAPAAIRDAFGYADQPNFPARHNIAPTQPVPVVIVDAGARRFRLMRWGFLPSWAKDPRKFTLLINARAETLL
EKPAFRNAVRRRRCLVPSDGYYEWKTVGTRKQPYFIHPAGGGPIGFAGLWETWVGPNGEELDTIAIVTTAAREGMTELHD
RVPVTIAPQDYAAWLDCAEVDAESAAALLRAPLAGTFVWYPVSTAVNRVANDNPQLILPISDEEILSEAPVGAQKSARTR
PAAKPKAAASDDGGQGSLF

Specific function: Unknown

COG id: COG2135

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0361 family [H]

Homologues:

Organism=Homo sapiens, GI54607106, Length=273, Percent_Identity=29.6703296703297, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI54607104, Length=273, Percent_Identity=29.6703296703297, Blast_Score=102, Evalue=2e-22,
Organism=Escherichia coli, GI48994894, Length=228, Percent_Identity=31.140350877193, Blast_Score=109, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6323761, Length=260, Percent_Identity=30, Blast_Score=108, Evalue=9e-25,
Organism=Drosophila melanogaster, GI21355761, Length=268, Percent_Identity=28.3582089552239, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003738 [H]

Pfam domain/function: PF02586 DUF159 [H]

EC number: NA

Molecular weight: Translated: 28226; Mature: 28226

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGRFVMTSAPAAIRDAFGYADQPNFPARHNIAPTQPVPVVIVDAGARRFRLMRWGFLPS
CCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHEEHHHHCCCCC
WAKDPRKFTLLINARAETLLEKPAFRNAVRRRRCLVPSDGYYEWKTVGTRKQPYFIHPAG
CCCCCEEEEEEEECCHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCC
GGPIGFAGLWETWVGPNGEELDTIAIVTTAAREGMTELHDRVPVTIAPQDYAAWLDCAEV
CCCCCHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHC
DAESAAALLRAPLAGTFVWYPVSTAVNRVANDNPQLILPISDEEILSEAPVGAQKSARTR
CHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCC
PAAKPKAAASDDGGQGSLF
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MCGRFVMTSAPAAIRDAFGYADQPNFPARHNIAPTQPVPVVIVDAGARRFRLMRWGFLPS
CCCCEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHEEHHHHCCCCC
WAKDPRKFTLLINARAETLLEKPAFRNAVRRRRCLVPSDGYYEWKTVGTRKQPYFIHPAG
CCCCCEEEEEEEECCHHHHHHCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCC
GGPIGFAGLWETWVGPNGEELDTIAIVTTAAREGMTELHDRVPVTIAPQDYAAWLDCAEV
CCCCCHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHC
DAESAAALLRAPLAGTFVWYPVSTAVNRVANDNPQLILPISDEEILSEAPVGAQKSARTR
CHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCCCCCC
PAAKPKAAASDDGGQGSLF
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]