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The map label for this gene is soxB [H]

Identifier: 86748266

GI number: 86748266

Start: 1311822

End: 1313072

Strand: Direct

Name: soxB [H]

Synonym: RPB_1141

Alternate gene names: 86748266

Gene position: 1311822-1313072 (Clockwise)

Preceding gene: 86748259

Following gene: 86748267

Centisome position: 24.6

GC content: 67.07

Gene sequence:

>1251_bases
ATGCGCTATTCGCTGTTCTCGCTTCTCGGCAACACACTCGGCGGCCACAAGGGCTGGAAGCCGACCTGGCGCGACGCCGC
GCCGAAGCCTGCCTACGATGTGGTGATCATCGGCGGCGGCGGCCACGGCCTCGCGACAGCCTATTATCTCGCCAGCCGCT
ACGGCGTGCGCAACGTCGCGGTGCTGGAAAAGGGCTGGATCGGCGGCGGCAATATGGGCCGCAACACCACCATCATCCGC
TCCAACTATCTGTTGCCCGGCAACATCCCGCTTTACGAGCTGTCGATGAAGCTGTGGGAGGGGCTGGAGCAGGACTTCAA
CTACAACGCCATGGTCAGCCAGCGCGGCGTGCTGAACCTGTATCATTCCGACGCCCAGCGCGACGCCTATGCGCGGCGCG
GCAACGCGATGCGGCTGCACGGCGTCGATGCCGAACTGCTCGACCGCGACGGCGTGCGCAAACTCTATCCGTTCCTGAAT
TTCGACGACGCGCGGTTTCCGATCCAGGGCGGCCTGCTGCAGGCCCGCGGCGGCACCGCGCGGCACGACGCGGTGGCCTG
GGGCTTCGCCCGCGGCGCCAGCGATCGCGGCGTCGACATCGTGCAGAATTGCGAAGTCACCGGCATCACCATTGTGAACG
GCCGGGTCACCGGGGTCGAGACCACGCGCGGCCCGATCGCTGCGGGCAAGGTCGGCATCGCCGTCGCCGGCTCGAGCTCG
CGCGTCGCCGCGATGGCCGGGATGCGGCTGCCGATCGAGTCCTTCGTGCTGCAGGCGATGGTGTCGGAAGGGCTGAAGCC
GATCATCCCCGGCGTCATCACCTTCGGGGCCGGACATTTCTATATCAGCCAGTCCGACAAAGGTGGCCTCGTGTTCGGCG
GCGATCTCGACGGCTACAATTCCTACGCGCAGCGCGGCAATCTGCCGACCGTGGAAGACATCTGCGAGGGCGGCATGGCG
CTGATGCCGGCGATCGGCCGCGCCCGCATCCTGCGCACCTGGGCCGGCCTTTGCGACATGTCGATGGACGGCTCGCCGAT
CATCGATCGCACGCCGACGCAGAATCTCTATCTCAATGCCGGCTGGAACTACGGCGGCTTCAAAGCCACGCCGGGCTCCG
GCCTCGTGTTCGCGCATCTGCTCGCCCGCGACGAGCCGCATCCCGCCGCCGTCGAGTTGCGGCTCGATCGGTTCGCGCGC
GGTGCGGTGATCGACGAAAAGGGCCAGGGCGCCCAACCGAATCTGCATTGA

Upstream 100 bases:

>100_bases
GGCAACGTCTTTGGCAATGGCGCTCCTGGGCAAGGGGATGTCGTTTTCAGTCTATAGCGGGTTTCGCCGATGCGCGACAG
TGCAGGCCGAAGGATCAAGC

Downstream 100 bases:

>100_bases
GGGCGCGATGAGAATTCCCTGCCCGTATTGTGGATCGCGCGATGTCTCCGAGTTCTCCTATCTCGGCGACGCGGCGCCGC
AAAGGCCTGATCCGTCAGGC

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRYSLFSLLGNTLGGHKGWKPTWRDAAPKPAYDVVIIGGGGHGLATAYYLASRYGVRNVAVLEKGWIGGGNMGRNTTIIR
SNYLLPGNIPLYELSMKLWEGLEQDFNYNAMVSQRGVLNLYHSDAQRDAYARRGNAMRLHGVDAELLDRDGVRKLYPFLN
FDDARFPIQGGLLQARGGTARHDAVAWGFARGASDRGVDIVQNCEVTGITIVNGRVTGVETTRGPIAAGKVGIAVAGSSS
RVAAMAGMRLPIESFVLQAMVSEGLKPIIPGVITFGAGHFYISQSDKGGLVFGGDLDGYNSYAQRGNLPTVEDICEGGMA
LMPAIGRARILRTWAGLCDMSMDGSPIIDRTPTQNLYLNAGWNYGGFKATPGSGLVFAHLLARDEPHPAAVELRLDRFAR
GAVIDEKGQGAQPNLH

Sequences:

>Translated_416_residues
MRYSLFSLLGNTLGGHKGWKPTWRDAAPKPAYDVVIIGGGGHGLATAYYLASRYGVRNVAVLEKGWIGGGNMGRNTTIIR
SNYLLPGNIPLYELSMKLWEGLEQDFNYNAMVSQRGVLNLYHSDAQRDAYARRGNAMRLHGVDAELLDRDGVRKLYPFLN
FDDARFPIQGGLLQARGGTARHDAVAWGFARGASDRGVDIVQNCEVTGITIVNGRVTGVETTRGPIAAGKVGIAVAGSSS
RVAAMAGMRLPIESFVLQAMVSEGLKPIIPGVITFGAGHFYISQSDKGGLVFGGDLDGYNSYAQRGNLPTVEDICEGGMA
LMPAIGRARILRTWAGLCDMSMDGSPIIDRTPTQNLYLNAGWNYGGFKATPGSGLVFAHLLARDEPHPAAVELRLDRFAR
GAVIDEKGQGAQPNLH
>Mature_416_residues
MRYSLFSLLGNTLGGHKGWKPTWRDAAPKPAYDVVIIGGGGHGLATAYYLASRYGVRNVAVLEKGWIGGGNMGRNTTIIR
SNYLLPGNIPLYELSMKLWEGLEQDFNYNAMVSQRGVLNLYHSDAQRDAYARRGNAMRLHGVDAELLDRDGVRKLYPFLN
FDDARFPIQGGLLQARGGTARHDAVAWGFARGASDRGVDIVQNCEVTGITIVNGRVTGVETTRGPIAAGKVGIAVAGSSS
RVAAMAGMRLPIESFVLQAMVSEGLKPIIPGVITFGAGHFYISQSDKGGLVFGGDLDGYNSYAQRGNLPTVEDICEGGMA
LMPAIGRARILRTWAGLCDMSMDGSPIIDRTPTQNLYLNAGWNYGGFKATPGSGLVFAHLLARDEPHPAAVELRLDRFAR
GAVIDEKGQGAQPNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=373, Percent_Identity=24.9329758713137, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21361378, Length=373, Percent_Identity=24.9329758713137, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI24797151, Length=405, Percent_Identity=23.7037037037037, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI194306651, Length=428, Percent_Identity=22.6635514018692, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1787438, Length=319, Percent_Identity=24.1379310344828, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI20130091, Length=401, Percent_Identity=24.6882793017456, Blast_Score=82, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 44710; Mature: 44710

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSLFSLLGNTLGGHKGWKPTWRDAAPKPAYDVVIIGGGGHGLATAYYLASRYGVRNVA
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEE
VLEKGWIGGGNMGRNTTIIRSNYLLPGNIPLYELSMKLWEGLEQDFNYNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
YHSDAQRDAYARRGNAMRLHGVDAELLDRDGVRKLYPFLNFDDARFPIQGGLLQARGGTA
ECCCHHHHHHHHCCCEEEEECCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCC
RHDAVAWGFARGASDRGVDIVQNCEVTGITIVNGRVTGVETTRGPIAAGKVGIAVAGSSS
CCHHEEEHHHCCCCCCCCEEECCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCC
RVAAMAGMRLPIESFVLQAMVSEGLKPIIPGVITFGAGHFYISQSDKGGLVFGGDLDGYN
CEEEHHCCCCCHHHHHHHHHHHCCCHHHCCHHEEECCCEEEEEECCCCCEEECCCCCCCH
SYAQRGNLPTVEDICEGGMALMPAIGRARILRTWAGLCDMSMDGSPIIDRTPTQNLYLNA
HHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
GWNYGGFKATPGSGLVFAHLLARDEPHPAAVELRLDRFARGAVIDEKGQGAQPNLH
CCCCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MRYSLFSLLGNTLGGHKGWKPTWRDAAPKPAYDVVIIGGGGHGLATAYYLASRYGVRNVA
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEE
VLEKGWIGGGNMGRNTTIIRSNYLLPGNIPLYELSMKLWEGLEQDFNYNAMVSQRGVLNL
EEECCCCCCCCCCCCEEEEEECEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEE
YHSDAQRDAYARRGNAMRLHGVDAELLDRDGVRKLYPFLNFDDARFPIQGGLLQARGGTA
ECCCHHHHHHHHCCCEEEEECCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCC
RHDAVAWGFARGASDRGVDIVQNCEVTGITIVNGRVTGVETTRGPIAAGKVGIAVAGSSS
CCHHEEEHHHCCCCCCCCEEECCCCEEEEEEECCEEEEEECCCCCCCCCCEEEEEECCCC
RVAAMAGMRLPIESFVLQAMVSEGLKPIIPGVITFGAGHFYISQSDKGGLVFGGDLDGYN
CEEEHHCCCCCHHHHHHHHHHHCCCHHHCCHHEEECCCEEEEEECCCCCEEECCCCCCCH
SYAQRGNLPTVEDICEGGMALMPAIGRARILRTWAGLCDMSMDGSPIIDRTPTQNLYLNA
HHHHCCCCCCHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC
GWNYGGFKATPGSGLVFAHLLARDEPHPAAVELRLDRFARGAVIDEKGQGAQPNLH
CCCCCCEEECCCCCHHHHHHHHCCCCCCCEEEEEEHHHHCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]