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The map label for this gene is ycjD [H]

Identifier: 86747130

GI number: 86747130

Start: 3640

End: 4011

Strand: Direct

Name: ycjD [H]

Synonym: RPB_0003

Alternate gene names: 86747130

Gene position: 3640-4011 (Clockwise)

Preceding gene: 86747129

Following gene: 86747131

Centisome position: 0.07

GC content: 60.75

Gene sequence:

>372_bases
ATGCCGCAGCGCCCGCGTCACGTTTCAACCCCAGCGAAACTCCGTGCCTTTGCCAAGACGATGCGGCACGCGCCCACTGA
TGCGGAATCCGCGATGTGGAAGTTGCTGCGCGATCGCCGTTTCGCCCAGCTGAAATTCCGCCGGCAGGTGCCGTTCCAGA
ACTACATTCTCGACTTCGTCTGCTTCGAGCAGCGCCTGGTGATCGAGATCGACGGCAGTCAGCATGCAGAGCAAACGCGC
GACCAGATTCGCGATGCCACGCTCCTCGCTGCGGGCTTTCGCGTGCCGCGCTACTGGAACAACGACGTGCTGCAGCGTCG
CACAGCGGTGCTTGAAGATATCCTTGCGAAGCTTTCCGAAACGGACGAATAA

Upstream 100 bases:

>100_bases
GCATTTGCCTGACTTGACCAGACAATGCAGAGCCCGCTTTGATCACCCTCTCCCCTTGTGGGAGAGGGTGGCTTCGCGAA
GCGAAGCCGGGTGAGGGGTC

Downstream 100 bases:

>100_bases
CCCCTCACCCGGCGCCTCACTTCGTTCGGCGCCACCCTCTCCCACAAGGGGAGAGGGTCACTCGGCGCTGTTCTCGCTTT
AATCACATGACCGCCTCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MPQRPRHVSTPAKLRAFAKTMRHAPTDAESAMWKLLRDRRFAQLKFRRQVPFQNYILDFVCFEQRLVIEIDGSQHAEQTR
DQIRDATLLAAGFRVPRYWNNDVLQRRTAVLEDILAKLSETDE

Sequences:

>Translated_123_residues
MPQRPRHVSTPAKLRAFAKTMRHAPTDAESAMWKLLRDRRFAQLKFRRQVPFQNYILDFVCFEQRLVIEIDGSQHAEQTR
DQIRDATLLAAGFRVPRYWNNDVLQRRTAVLEDILAKLSETDE
>Mature_122_residues
PQRPRHVSTPAKLRAFAKTMRHAPTDAESAMWKLLRDRRFAQLKFRRQVPFQNYILDFVCFEQRLVIEIDGSQHAEQTRD
QIRDATLLAAGFRVPRYWNNDVLQRRTAVLEDILAKLSETDE

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=108, Percent_Identity=41.6666666666667, Blast_Score=89, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14525; Mature: 14394

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQRPRHVSTPAKLRAFAKTMRHAPTDAESAMWKLLRDRRFAQLKFRRQVPFQNYILDFV
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
CFEQRLVIEIDGSQHAEQTRDQIRDATLLAAGFRVPRYWNNDVLQRRTAVLEDILAKLSE
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
TDE
CCC
>Mature Secondary Structure 
PQRPRHVSTPAKLRAFAKTMRHAPTDAESAMWKLLRDRRFAQLKFRRQVPFQNYILDFV
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
CFEQRLVIEIDGSQHAEQTRDQIRDATLLAAGFRVPRYWNNDVLQRRTAVLEDILAKLSE
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
TDE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]