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The map label for this gene is recO

Identifier: 86609992

GI number: 86609992

Start: 2663676

End: 2664533

Strand: Direct

Name: recO

Synonym: CYB_2559

Alternate gene names: 86609992

Gene position: 2663676-2664533 (Clockwise)

Preceding gene: 86609991

Following gene: 86609993

Centisome position: 87.43

GC content: 60.72

Gene sequence:

>858_bases
ATGAGTGGCCGCACCTACCGGGTTACGGGCATCAACCTGAAAGGGATCCCACTGGGAGAGGCGGATCGGATTGTAACCAT
CTTGACCCGCGAGCAAGGGTTGATCCGGGCGGTGGCCAAGGGATCCCGTAAGCAGCCTTCCAAGCTGGGCGGGCGGATGG
AGCCTTTTGTCATCAACGACTTGCTGATGGTGCGGGGGCGTTGGTCTGCCCAAACAGAGACTTCCCAGCGTCTACAGCGC
ATCGTCCAAGCGGAAACCCTCCAGACTTTTCCCCGCCTCAGCCGCAGCTTAGCCCATCTCACAGCAGCGCAGTATTTGGC
GGAGGTGGCCTTGCTGTTGGCCTTGCCCGATCAAGCCCAGGAAGAGCTGTTTGTGGTGTTGGTCGAACACTTGGAACGCA
TCGAGCGGGCTGCTTCGGAACAGGCCGTTCTGCCCTTGCTCACCCACGGGTTGTACCACCTCCTGGCGTTGGCGGGGTTC
GCCCCTCAGGTGCAGGCTTGTTACTTCTGTCAAGGGGGGTTGGTCGGCAGCGTTTTTTTCAGCCCCCAATGGGGTGGCTT
GATCTGTGATCCCTGCCGGGTGGCCCAGCGGCCCAGCCCGATTGCCTGGGTCTCAGCCTCTGCCTTGCGTGCCTTGGGAT
CCCTGCCCAGCTCCACACTGCCTCTGCCGGAGGATTCCCTGCCTTTGGCTGCTTGGCTGGAGGCAGAACGTCTGTTGCGG
CGTGTTTTGGAGCATCATACGGATCGAGAAATCCGTTCCGCCGAGCTATTGGCCAGTTGCTACGCTGTTCCCACCGCAAA
CGGTCAAGGATCCCCAGCTTTTCCTGAGGGACATCCCGAAAAATGGGCATCGGCCTGA

Upstream 100 bases:

>100_bases
CAGTGGCTCAAGCAGAGGCCATGATCCAGGCGGGGGCCAGCCGTATTGGCACCTCTTGGGGGCTGGAGCTGATGCAAGAG
CTGAAAGCCAGAGGAACCCC

Downstream 100 bases:

>100_bases
AAAAGTTGTGAAGGTATGTATCAAGTCCGGCCCAATAGCCGCAAAATAGAGCATCGAGGCGGGTTGGCAGCCGATTTTGG
ATGATAAATTAGGTTATGGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSGRTYRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVINDLLMVRGRWSAQTETSQRLQR
IVQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQEELFVVLVEHLERIERAASEQAVLPLLTHGLYHLLALAGF
APQVQACYFCQGGLVGSVFFSPQWGGLICDPCRVAQRPSPIAWVSASALRALGSLPSSTLPLPEDSLPLAAWLEAERLLR
RVLEHHTDREIRSAELLASCYAVPTANGQGSPAFPEGHPEKWASA

Sequences:

>Translated_285_residues
MSGRTYRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVINDLLMVRGRWSAQTETSQRLQR
IVQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQEELFVVLVEHLERIERAASEQAVLPLLTHGLYHLLALAGF
APQVQACYFCQGGLVGSVFFSPQWGGLICDPCRVAQRPSPIAWVSASALRALGSLPSSTLPLPEDSLPLAAWLEAERLLR
RVLEHHTDREIRSAELLASCYAVPTANGQGSPAFPEGHPEKWASA
>Mature_284_residues
SGRTYRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVINDLLMVRGRWSAQTETSQRLQRI
VQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQEELFVVLVEHLERIERAASEQAVLPLLTHGLYHLLALAGFA
PQVQACYFCQGGLVGSVFFSPQWGGLICDPCRVAQRPSPIAWVSASALRALGSLPSSTLPLPEDSLPLAAWLEAERLLRR
VLEHHTDREIRSAELLASCYAVPTANGQGSPAFPEGHPEKWASA

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_SYNJB (Q2JIQ7)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_478754.1
- STRING:   Q2JIQ7
- GeneID:   3900667
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_2559
- TIGR:   CYB_2559
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   TREQGLI
- ProtClustDB:   PRK00085
- BioCyc:   SSP321332:CYB_2559-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 31166; Mature: 31035

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRTYRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVIND
CCCCEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHHCCCCCCHHHHH
LLMVRGRWSAQTETSQRLQRIVQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQ
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EELFVVLVEHLERIERAASEQAVLPLLTHGLYHLLALAGFAPQVQACYFCQGGLVGSVFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCEEEEEE
SPQWGGLICDPCRVAQRPSPIAWVSASALRALGSLPSSTLPLPEDSLPLAAWLEAERLLR
CCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
RVLEHHTDREIRSAELLASCYAVPTANGQGSPAFPEGHPEKWASA
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
SGRTYRVTGINLKGIPLGEADRIVTILTREQGLIRAVAKGSRKQPSKLGGRMEPFVIND
CCCEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHCCCCCCHHHHCCCCCCHHHHH
LLMVRGRWSAQTETSQRLQRIVQAETLQTFPRLSRSLAHLTAAQYLAEVALLLALPDQAQ
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EELFVVLVEHLERIERAASEQAVLPLLTHGLYHLLALAGFAPQVQACYFCQGGLVGSVFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCEEEEEE
SPQWGGLICDPCRVAQRPSPIAWVSASALRALGSLPSSTLPLPEDSLPLAAWLEAERLLR
CCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
RVLEHHTDREIRSAELLASCYAVPTANGQGSPAFPEGHPEKWASA
HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA