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The map label for this gene is deoC [H]

Identifier: 86609991

GI number: 86609991

Start: 2662984

End: 2663679

Strand: Direct

Name: deoC [H]

Synonym: CYB_2558

Alternate gene names: 86609991

Gene position: 2662984-2663679 (Clockwise)

Preceding gene: 86609989

Following gene: 86609992

Centisome position: 87.41

GC content: 60.49

Gene sequence:

>696_bases
ATGCTCTCTCTGGAGCGCAAGGGCATAGCGGATAGCTCGCTCAATTTGGCGGAGTACATCGACCATACTCTGCTGTTGCC
GATGGTTACTCCAGAACAGATTGACCAGGGGTGTGAGATTGCCTTGCGCTATGGCTTCCCCACTTTTTGTGTTCCTCCTT
GCTACGTGCCGCGGGTGGTGGAGCGGCTGCACGGATCCCCGGTCAAGGTGAGCACGGTGGTGGGGTTTCCCCTGGGCACA
ACCACTGCAGAGGCCAAGCTTTACGAGGCCCAACTGGCGGTGGAGCAGGGGTGCCGGGAGCTGGATGTCCGCATCAACTT
GGCTTGGCTCAAGGCGGGAGAGCTGGATCGCCTCCATGCCGAGATTGCCCAACTGGTGGAAGAAACGGGGGTTTGCGTCA
AGGCCATTTTGGAAACGGCTCTGCTGACCGAGGAGGAGAAAAAGCTGGCCGGGGAGATTTGTATCGATGCGGGGGCGGCT
TTTCTGATGACTTCCACCGGCTGGATGGGGGGGGCGACGCCGGCAGATGTGCAACTGTTGTGGCAACTCAGCCGCGGCAA
AGTGGGGGTGAAAGCGTCGGGCGGCATTCGCACAGTGGCTCAAGCAGAGGCCATGATCCAGGCGGGGGCCAGCCGTATTG
GCACCTCTTGGGGGCTGGAGCTGATGCAAGAGCTGAAAGCCAGAGGAACCCCATGA

Upstream 100 bases:

>100_bases
CTTCCGCATTCCTCCCGGCACTGACCCTACGGGTACAGTGCGGGGCTCCTGCGATTTCTAGCTGAAGCTAGAGTAAAGAT
GGGTGCTGGGGGATCGACCA

Downstream 100 bases:

>100_bases
GTGGCCGCACCTACCGGGTTACGGGCATCAACCTGAAAGGGATCCCACTGGGAGAGGCGGATCGGATTGTAACCATCTTG
ACCCGCGAGCAAGGGTTGAT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MLSLERKGIADSSLNLAEYIDHTLLLPMVTPEQIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVKVSTVVGFPLGT
TTAEAKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETALLTEEEKKLAGEICIDAGAA
FLMTSTGWMGGATPADVQLLWQLSRGKVGVKASGGIRTVAQAEAMIQAGASRIGTSWGLELMQELKARGTP

Sequences:

>Translated_231_residues
MLSLERKGIADSSLNLAEYIDHTLLLPMVTPEQIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVKVSTVVGFPLGT
TTAEAKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETALLTEEEKKLAGEICIDAGAA
FLMTSTGWMGGATPADVQLLWQLSRGKVGVKASGGIRTVAQAEAMIQAGASRIGTSWGLELMQELKARGTP
>Mature_231_residues
MLSLERKGIADSSLNLAEYIDHTLLLPMVTPEQIDQGCEIALRYGFPTFCVPPCYVPRVVERLHGSPVKVSTVVGFPLGT
TTAEAKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHAEIAQLVEETGVCVKAILETALLTEEEKKLAGEICIDAGAA
FLMTSTGWMGGATPADVQLLWQLSRGKVGVKASGGIRTVAQAEAMIQAGASRIGTSWGLELMQELKARGTP

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=185, Percent_Identity=31.8918918918919, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1790841, Length=222, Percent_Identity=29.7297297297297, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24835; Mature: 24835

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLERKGIADSSLNLAEYIDHTLLLPMVTPEQIDQGCEIALRYGFPTFCVPPCYVPRVV
CCCCCCCCCCCCCCCHHHHHHHHHEECCCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHH
ERLHGSPVKVSTVVGFPLGTTTAEAKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHA
HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECEEEEEEEECCCCHHHHHH
EIAQLVEETGVCVKAILETALLTEEEKKLAGEICIDAGAAFLMTSTGWMGGATPADVQLL
HHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHH
WQLSRGKVGVKASGGIRTVAQAEAMIQAGASRIGTSWGLELMQELKARGTP
EEHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSLERKGIADSSLNLAEYIDHTLLLPMVTPEQIDQGCEIALRYGFPTFCVPPCYVPRVV
CCCCCCCCCCCCCCCHHHHHHHHHEECCCCHHHHCCCCEEEEECCCCCCCCCCCHHHHHH
ERLHGSPVKVSTVVGFPLGTTTAEAKLYEAQLAVEQGCRELDVRINLAWLKAGELDRLHA
HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECEEEEEEEECCCCHHHHHH
EIAQLVEETGVCVKAILETALLTEEEKKLAGEICIDAGAAFLMTSTGWMGGATPADVQLL
HHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHH
WQLSRGKVGVKASGGIRTVAQAEAMIQAGASRIGTSWGLELMQELKARGTP
EEHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA