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The map label for this gene is ycfH [C]

Identifier: 86609899

GI number: 86609899

Start: 2561278

End: 2562057

Strand: Direct

Name: ycfH [C]

Synonym: CYB_2464

Alternate gene names: 86609899

Gene position: 2561278-2562057 (Clockwise)

Preceding gene: 86609896

Following gene: 86609900

Centisome position: 84.07

GC content: 61.54

Gene sequence:

>780_bases
GTGGATACTCACGTCCACCTCAACTACCCCGATTTTGCCGCGGATCTGCCCCAAGTGGCCGAGCGCTGGCGTCAGACGGG
GATCCGGCGTTTGGTGCATTCTTGTGTAACACCGGCAGAATTCCCCCAGTTGCAGGCCATTGCCGACCAGTATCCGGAAG
TATTTTTGTCGGTGGGGCTGCACCCTTTGGAGGCGGGCCAGTGGCAGCCCGATTTGGCCGAAAAGATCGCCCACCTGGCC
GCCAGCGACGAGCGAGTGGTGGCTATCGGGGAGACGGGCCTGGATTTCTACAAGTCCAACCCGGCGGATATCGAGCGGCA
AAAAGAATCCTTCTGGGCCCAGATTGCCATTGCCCAAGCGCAGGATCTGGCGTTGATCGTCCATTGCCGCGAGGCGGCAG
CAGCCACCTACGCCATCCTCAAGGAGGCCATGGCCACGGGGGGGCCAGTGCGGGCGGTGATGCATTGCTGGAGCGGATCC
CCGGTGGAAACCCGGCAGTTTGTGGAGCTGGGCTGCTACATCAGCTTCAGCGGCATTGTTACTTTCAAGAACGCCGAGAC
TGTCCGCCGGTCGGCCTTGGAGGTGCCCCTATCCCAGCTTTTGGTGGAAACCGATTGCCCTTTTCTGGCTCCCACCCCCT
TCCGCGGCAAACGCAATGAGCCGGCCTATGTGCAGCGGGTGGCCCAAACCTTGGCGGAGCTGTTGGGAATCCCGCCGGAA
AAACTGGCAGAAGAAACCAGCCAGAACGCTGCTCGCCTGTTTCGGTTGCCTCTCCCCTAG

Upstream 100 bases:

>100_bases
CAAGCAGGCCGGGGACAGCTTTTACAATTGGATAAGGTTGGCAACAAGATTGTTGGGGAGCTGAGCCTTGAGCACCGCCG
TCTTACCTGCTGCTCCTTTG

Downstream 100 bases:

>100_bases
CTCTGCTTTCCGAGGGCGCGGGTGAGCCGTAGGCCATTCCCGGCTCCAGATCTCAGGCGATTCCAACCCGGGAAACCCTG
AGTTACCGTTTTTAACTTTT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MDTHVHLNYPDFAADLPQVAERWRQTGIRRLVHSCVTPAEFPQLQAIADQYPEVFLSVGLHPLEAGQWQPDLAEKIAHLA
ASDERVVAIGETGLDFYKSNPADIERQKESFWAQIAIAQAQDLALIVHCREAAAATYAILKEAMATGGPVRAVMHCWSGS
PVETRQFVELGCYISFSGIVTFKNAETVRRSALEVPLSQLLVETDCPFLAPTPFRGKRNEPAYVQRVAQTLAELLGIPPE
KLAEETSQNAARLFRLPLP

Sequences:

>Translated_259_residues
MDTHVHLNYPDFAADLPQVAERWRQTGIRRLVHSCVTPAEFPQLQAIADQYPEVFLSVGLHPLEAGQWQPDLAEKIAHLA
ASDERVVAIGETGLDFYKSNPADIERQKESFWAQIAIAQAQDLALIVHCREAAAATYAILKEAMATGGPVRAVMHCWSGS
PVETRQFVELGCYISFSGIVTFKNAETVRRSALEVPLSQLLVETDCPFLAPTPFRGKRNEPAYVQRVAQTLAELLGIPPE
KLAEETSQNAARLFRLPLP
>Mature_259_residues
MDTHVHLNYPDFAADLPQVAERWRQTGIRRLVHSCVTPAEFPQLQAIADQYPEVFLSVGLHPLEAGQWQPDLAEKIAHLA
ASDERVVAIGETGLDFYKSNPADIERQKESFWAQIAIAQAQDLALIVHCREAAAATYAILKEAMATGGPVRAVMHCWSGS
PVETRQFVELGCYISFSGIVTFKNAETVRRSALEVPLSQLLVETDCPFLAPTPFRGKRNEPAYVQRVAQTLAELLGIPPE
KLAEETSQNAARLFRLPLP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=29.2134831460674, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=28.9473684210526, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=28.8461538461538, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI14042943, Length=269, Percent_Identity=24.907063197026, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI225903439, Length=229, Percent_Identity=26.6375545851528, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=6e-15,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=41.3793103448276, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=31.0344827586207, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=34.3629343629344, Blast_Score=119, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.4647887323944, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=30.3030303030303, Blast_Score=111, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17565396, Length=216, Percent_Identity=28.2407407407407, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543026, Length=192, Percent_Identity=26.0416666666667, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=26.2237762237762, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI221330018, Length=276, Percent_Identity=26.0869565217391, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24586117, Length=276, Percent_Identity=26.0869565217391, Blast_Score=83, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28670; Mature: 28670

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTHVHLNYPDFAADLPQVAERWRQTGIRRLVHSCVTPAEFPQLQAIADQYPEVFLSVGL
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
HPLEAGQWQPDLAEKIAHLAASDERVVAIGETGLDFYKSNPADIERQKESFWAQIAIAQA
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
QDLALIVHCREAAAATYAILKEAMATGGPVRAVMHCWSGSPVETRQFVELGCYISFSGIV
CCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCEEEECCEE
TFKNAETVRRSALEVPLSQLLVETDCPFLAPTPFRGKRNEPAYVQRVAQTLAELLGIPPE
EECCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
KLAEETSQNAARLFRLPLP
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDTHVHLNYPDFAADLPQVAERWRQTGIRRLVHSCVTPAEFPQLQAIADQYPEVFLSVGL
CCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
HPLEAGQWQPDLAEKIAHLAASDERVVAIGETGLDFYKSNPADIERQKESFWAQIAIAQA
CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
QDLALIVHCREAAAATYAILKEAMATGGPVRAVMHCWSGSPVETRQFVELGCYISFSGIV
CCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHCEEEECCEE
TFKNAETVRRSALEVPLSQLLVETDCPFLAPTPFRGKRNEPAYVQRVAQTLAELLGIPPE
EECCHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
KLAEETSQNAARLFRLPLP
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]