| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is cph2 [H]
Identifier: 86609900
GI number: 86609900
Start: 2562273
End: 2564777
Strand: Direct
Name: cph2 [H]
Synonym: CYB_2465
Alternate gene names: 86609900
Gene position: 2562273-2564777 (Clockwise)
Preceding gene: 86609899
Following gene: 86609901
Centisome position: 84.1
GC content: 61.64
Gene sequence:
>2505_bases ATGGATACTGAAACGTGGGCTGCCGCAGCTCGACCCAGCCGAGATGCCCTCATCAACCGCATCACCCACCAGATTCGGCA ATCCCTGGAGCTGGATCAGATCCTGAGGGCGACGGTGGAGGAGGTGCGCGCCTTTTTGGGTACGGATCGGGTGAAGGTGT ACCGCTTCGACCCGGAAGGGCATGGGACGGTGGTGGCGGAAGCACGAGGCGGGGAGCGGCTGCCCTCGCTCTTGGGGCTG ACTTTTCCGGCAGGGGACATTCCCGAGGAGGCGCGGCGGTTGTTTCGCCTAGCTCAGGTGCGGGTGATTGTGGATGTAGA GGCGCAGAGCCGTTCCATCAGCCAGCCGGAGTCTTGGGGGTTGTCTGCTAGGGTTCCTCTGGGCGAGCCGCTGCAGCGGC CCGTGGATCCCTGCCATGTTCACTATTTGAAATCCATGGGGGTGGCCTCTTCCTTGGTGGTTCCCCTGATGCATCACCAG GAGCTATGGGGGCTGTTGGTCTCCCATCATGCTGAGCCTCGTCCCTACTCCCAAGAAGAGCTGCAGGTGGTGCAGTTGCT GGCGGATCAAGTTTCCATTGCCATTGCTCAGGCGGAATTGCTGGAGCAAGCGCGGCAAAAGGCGCAGCAGGAACGCCTAA TCAACCAAATTGCTGCCCTGGTTTATTCGCCCCTACACCCGGAGACGACCTTGACCACGGTGCTGGAGCAGCTTGCTGCC GGTTTGCAGGGGATCGGGGCACGGCTGCGGATCCACTTTATGGGCGCAGACACCCTCTGTTGTCATGGCGTGCAACCCCC GGCCAGCTACGACACCTGGCTACAGGAGCAGCTCGGAAGGGCCGGAGGAGCGGGGGGCTGGGTCAAGATGTGGTCGCTCT CCCACTTGGAGAAATGGCCGGAGCTGCAAGAGCAGATGAAGCAGACACCCATTCGTGGCCTGCTGGTGGCCCAGCTCGCC TGGAATGACCAGCCGGTGGGCTGGCTGAGCGTGTTTCGCGGGGCCGTTTACCAAGAAACCCACTGGGCGGGCTACCGTTG GTTTACCCAGGGGGATCCCAGACAAGAACTGCCTTTGATCTCTTTTGCTGCCTGGCGGGAGCTGAAAATTGACGAGCCTA AGGCTTGGTCAGCTGCAGAGCAAGAGCTGATGAGTCGGGTCGGGGTACATTTGGCCCTGTCCATTACGCAAAATCAGCTC TACCGGCAGTTGCAAACCCTCAACGCCCGTCTGGAGCAGGAGGTGCAGGAGCGGACGGCGGCCCTGCAGCGATCTCTGGC TATGGATGCCCTCTTGCAGCGGGTCACCGACCAGGTGCGCAGCAGTTTGGAGGAAGCCCAGATCCTGCGGGCAGTGGTGC AAGAATTGGCTCTGGGGTTGCCCATTCAAGGTTGCGATCTCTGTCTCTACGATTGGGCATCTGGCCAGGCGACGGTGCGC TATGAATACACCTCTGCTCTACCACCTGCCGGTGGGATCACCCTGACCTTGGCCGACTACCCCGATCTTTACCGGCACCT GCAAGGGGGTCAAGCGGTGCAATTCTGCCACTTGCCTGGGCAGGGCTGGATCCCCCGTCGGGAAGGGCTGACCCTGCTGG TGTGCCCGCTGCGGGATGACCAAGGGGTGCTGGGGGATCTCTGGCTGGCGAAGCCGGCAGCCAAGTGCTTTGATGAACTG GAGGTGCAGGTGGTGCAGCAGGTGGCGGATCACTGCGCCATTGCCATCCGCCAGGCCCGCCTCTACCAGGCTTCTGTGCA GCAAATTGGTGAGCTGGAGCGCCTCAACCGCCTCAAAGATGATTTTTTGAGCACCGTCTCCCACGAGCTGCGCACCCCCA TCACCAACATGAGGATGGCCATCCAACTGCTGAAAACCGCCCGCGCCCCCCAAAAACGAGAGCAATATCTCAAGATCTTG GAGCAGGAGTGTGAGCGGGAGGCGGAATTGGTGAACGACCTGCTGGATCTGCAGCGGTTGGAGCAGGGATCCAAAACGCT CCATCTGGAAGAAGTGCCGCTGGCAACCTGGCTGCCCAGCGTGCTGGAGCCGTTTCTACAGCGGGCCCAGGTCAACCAGC AACGGTTGCAGTGGCAGATCGCGCCGAATGTGGGCAAGGTGCTCACCGATCAAGGTGGCCTGGAGCGGGTGGTGCAGGAG CTGGTCAACAACGCCTGCAAGTATACTCCCCCAGGGTGCAGCATCTGGGTAACAGCGCAGCGGCCCGGCCCGCAGCAGGT GGAAATCCGGGTGATCAACGAGGGGGTGGAAATTTCCCCTGCCGAGCAGGAGCGCATCTTCGAGAAGTTCTACCGCATTC CCAGCGGGGATCCCTGGAAACGGGGCGGCACCGGCCTGGGCCTGGCTTTGGTCAAGCAGTGGATGCAGCGGTTGGGGGGC AGCGTCTCAGTGGAGAGCTCTCAAGGCAAAACCTGCTTTACCCTGGTGTTGCCGCAGGGATCCCTGCCTGTGCAGACCTC ACCCCTAGCCCACAACTGTGCCTAG
Upstream 100 bases:
>100_bases TTGAACTCCGACTGCTCTTCTCAAGGGCATCCTATGCTGGAAAAAAGGGATGTATTTTTAGGTACTTTCCGCTAATTCCA GGGGCTAGGGGCTTGCAACT
Downstream 100 bases:
>100_bases CCACATGAGCAATGCCCACTCAGAAGCGTTGCGTTTGGCCGCCGAGCAGTTTAACCGGGGGGAATTTTACGCCTGCCACG ACACCCTAGAGGCCCTGTGG
Product: sensor histidine kinase
Products: NA
Alternate protein names: Bacteriophytochrome cph2 [H]
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MDTETWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGL TFPAGDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ ELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLAA GLQGIGARLRIHFMGADTLCCHGVQPPASYDTWLQEQLGRAGGAGGWVKMWSLSHLEKWPELQEQMKQTPIRGLLVAQLA WNDQPVGWLSVFRGAVYQETHWAGYRWFTQGDPRQELPLISFAAWRELKIDEPKAWSAAEQELMSRVGVHLALSITQNQL YRQLQTLNARLEQEVQERTAALQRSLAMDALLQRVTDQVRSSLEEAQILRAVVQELALGLPIQGCDLCLYDWASGQATVR YEYTSALPPAGGITLTLADYPDLYRHLQGGQAVQFCHLPGQGWIPRREGLTLLVCPLRDDQGVLGDLWLAKPAAKCFDEL EVQVVQQVADHCAIAIRQARLYQASVQQIGELERLNRLKDDFLSTVSHELRTPITNMRMAIQLLKTARAPQKREQYLKIL EQECEREAELVNDLLDLQRLEQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVLTDQGGLERVVQE LVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFEKFYRIPSGDPWKRGGTGLGLALVKQWMQRLGG SVSVESSQGKTCFTLVLPQGSLPVQTSPLAHNCA
Sequences:
>Translated_834_residues MDTETWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGL TFPAGDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ ELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLAA GLQGIGARLRIHFMGADTLCCHGVQPPASYDTWLQEQLGRAGGAGGWVKMWSLSHLEKWPELQEQMKQTPIRGLLVAQLA WNDQPVGWLSVFRGAVYQETHWAGYRWFTQGDPRQELPLISFAAWRELKIDEPKAWSAAEQELMSRVGVHLALSITQNQL YRQLQTLNARLEQEVQERTAALQRSLAMDALLQRVTDQVRSSLEEAQILRAVVQELALGLPIQGCDLCLYDWASGQATVR YEYTSALPPAGGITLTLADYPDLYRHLQGGQAVQFCHLPGQGWIPRREGLTLLVCPLRDDQGVLGDLWLAKPAAKCFDEL EVQVVQQVADHCAIAIRQARLYQASVQQIGELERLNRLKDDFLSTVSHELRTPITNMRMAIQLLKTARAPQKREQYLKIL EQECEREAELVNDLLDLQRLEQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVLTDQGGLERVVQE LVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFEKFYRIPSGDPWKRGGTGLGLALVKQWMQRLGG SVSVESSQGKTCFTLVLPQGSLPVQTSPLAHNCA >Mature_834_residues MDTETWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGL TFPAGDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ ELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIAQAELLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLAA GLQGIGARLRIHFMGADTLCCHGVQPPASYDTWLQEQLGRAGGAGGWVKMWSLSHLEKWPELQEQMKQTPIRGLLVAQLA WNDQPVGWLSVFRGAVYQETHWAGYRWFTQGDPRQELPLISFAAWRELKIDEPKAWSAAEQELMSRVGVHLALSITQNQL YRQLQTLNARLEQEVQERTAALQRSLAMDALLQRVTDQVRSSLEEAQILRAVVQELALGLPIQGCDLCLYDWASGQATVR YEYTSALPPAGGITLTLADYPDLYRHLQGGQAVQFCHLPGQGWIPRREGLTLLVCPLRDDQGVLGDLWLAKPAAKCFDEL EVQVVQQVADHCAIAIRQARLYQASVQQIGELERLNRLKDDFLSTVSHELRTPITNMRMAIQLLKTARAPQKREQYLKIL EQECEREAELVNDLLDLQRLEQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVLTDQGGLERVVQE LVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFEKFYRIPSGDPWKRGGTGLGLALVKQWMQRLGG SVSVESSQGKTCFTLVLPQGSLPVQTSPLAHNCA
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 GGDEF domains [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=282, Percent_Identity=27.3049645390071, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1789149, Length=222, Percent_Identity=29.7297297297297, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI1786600, Length=265, Percent_Identity=30.5660377358491, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI145693157, Length=251, Percent_Identity=28.2868525896414, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI87081816, Length=278, Percent_Identity=30.5755395683453, Blast_Score=97, Evalue=5e-21, Organism=Escherichia coli, GI1786783, Length=233, Percent_Identity=29.1845493562232, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1790346, Length=221, Percent_Identity=30.316742081448, Blast_Score=93, Evalue=6e-20, Organism=Escherichia coli, GI1787894, Length=241, Percent_Identity=27.3858921161826, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788393, Length=242, Percent_Identity=26.0330578512397, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1788713, Length=226, Percent_Identity=25.2212389380531, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1788279, Length=233, Percent_Identity=26.1802575107296, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1786912, Length=234, Percent_Identity=26.9230769230769, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI1790861, Length=209, Percent_Identity=25.8373205741627, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI87082128, Length=228, Percent_Identity=28.5087719298246, Blast_Score=76, Evalue=1e-14, Organism=Escherichia coli, GI1790436, Length=215, Percent_Identity=28.8372093023256, Blast_Score=74, Evalue=5e-14, Organism=Escherichia coli, GI1789403, Length=208, Percent_Identity=27.4038461538462, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1790551, Length=309, Percent_Identity=26.8608414239482, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788549, Length=235, Percent_Identity=25.1063829787234, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR003018 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 [H]
Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]
EC number: 2.7.3.- [C]
Molecular weight: Translated: 93468; Mature: 93468
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTETWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEG CCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC HGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWG CCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCHHCC LSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEE CEEECCCCCHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH LQVVQLLADQVSIAIAQAELLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH GLQGIGARLRIHFMGADTLCCHGVQPPASYDTWLQEQLGRAGGAGGWVKMWSLSHLEKWP HHHCCCCEEEEEEECCCHHEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCH ELQEQMKQTPIRGLLVAQLAWNDQPVGWLSVFRGAVYQETHWAGYRWFTQGDPRQELPLI HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH SFAAWRELKIDEPKAWSAAEQELMSRVGVHLALSITQNQLYRQLQTLNARLEQEVQERTA HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALQRSLAMDALLQRVTDQVRSSLEEAQILRAVVQELALGLPIQGCDLCLYDWASGQATVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEE YEYTSALPPAGGITLTLADYPDLYRHLQGGQAVQFCHLPGQGWIPRREGLTLLVCPLRDD EEECCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC QGVLGDLWLAKPAAKCFDELEVQVVQQVADHCAIAIRQARLYQASVQQIGELERLNRLKD CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFLSTVSHELRTPITNMRMAIQLLKTARAPQKREQYLKILEQECEREAELVNDLLDLQRL HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVLTDQGGLERVVQE HCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCEEEECCCHHHHHCCCCCHHHHHHH LVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFEKFYRIPSGDPWK HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC RGGTGLGLALVKQWMQRLGGSVSVESSQGKTCFTLVLPQGSLPVQTSPLAHNCA CCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure MDTETWAAAARPSRDALINRITHQIRQSLELDQILRATVEEVRAFLGTDRVKVYRFDPEG CCCCHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC HGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQSRSISQPESWG CCEEEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCHHCC LSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPYSQEE CEEECCCCCHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH LQVVQLLADQVSIAIAQAELLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH GLQGIGARLRIHFMGADTLCCHGVQPPASYDTWLQEQLGRAGGAGGWVKMWSLSHLEKWP HHHCCCCEEEEEEECCCHHEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCH ELQEQMKQTPIRGLLVAQLAWNDQPVGWLSVFRGAVYQETHWAGYRWFTQGDPRQELPLI HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHH SFAAWRELKIDEPKAWSAAEQELMSRVGVHLALSITQNQLYRQLQTLNARLEQEVQERTA HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALQRSLAMDALLQRVTDQVRSSLEEAQILRAVVQELALGLPIQGCDLCLYDWASGQATVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEE YEYTSALPPAGGITLTLADYPDLYRHLQGGQAVQFCHLPGQGWIPRREGLTLLVCPLRDD EEECCCCCCCCCEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC QGVLGDLWLAKPAAKCFDELEVQVVQQVADHCAIAIRQARLYQASVQQIGELERLNRLKD CCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DFLSTVSHELRTPITNMRMAIQLLKTARAPQKREQYLKILEQECEREAELVNDLLDLQRL HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGSKTLHLEEVPLATWLPSVLEPFLQRAQVNQQRLQWQIAPNVGKVLTDQGGLERVVQE HCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHCEEEECCCHHHHHCCCCCHHHHHHH LVNNACKYTPPGCSIWVTAQRPGPQQVEIRVINEGVEISPAEQERIFEKFYRIPSGDPWK HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCC RGGTGLGLALVKQWMQRLGGSVSVESSQGKTCFTLVLPQGSLPVQTSPLAHNCA CCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 10978170; 11063585 [H]