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The map label for this gene is rbcR [H]

Identifier: 86609737

GI number: 86609737

Start: 2401039

End: 2401989

Strand: Direct

Name: rbcR [H]

Synonym: CYB_2296

Alternate gene names: 86609737

Gene position: 2401039-2401989 (Clockwise)

Preceding gene: 86609736

Following gene: 86609738

Centisome position: 78.81

GC content: 58.78

Gene sequence:

>951_bases
ATGGCGGATGAGTTGCCATTTACCTTAGATCAGCTCCTCATTGTGCGGGCAATTGCCCAGCAGGGTAGCTTTCGCCGTGC
TGCCGATAGCCTGTTTGTCTCCCAGCCTGCCGTCAGCTTGCAAGTACAGAACCTGGAGCGACAGTTGGGGGTGGTGCTGT
TCGACCGCAGTGGGCGCAAGGTGGAGCTGACGGATGCCGGGAAAGTGGTGCTGCAGTACAGCGAGCGCATCCTCAAGCTG
TGCCGTGAGGCCGTCGAGGCCCTAGCGGATTTGCAGAAAATGGAGGGGGGGCATCTGGTTCTGGGGGCCAGCCAAACGGT
GGGCACCTATGTCATGCCTTCTTTGATCGCCCAATATCACCGCCGCTATCCACAAATTTCCGTACAGCTCTTGGTGCAAT
CCACGCGGCGAATTGCCCAGAAATTGGTGGACGGCCAGTTGGACGTGGCCATTGTTGGCGGGGAGATCCCCTTTGAGCTG
CAGCGGCACTTGAAGGTGATGGCTCTGGCGGAAGATGAATATGTGTTGGTCGGTGCTCCCGGGTGTGCCATCGACTCTCC
GGCTCTTGTGGATCTGCTGGCTTTGCCCTTCATCACCTTGGATCCCCAGTCTTCCACTCGGCAAACCATCGATCGGGTGC
TGAACCGCCACGGCATTAACCCGGCCCAATTGAACGTGCGGCTGGAACTCAGCTCGATTGAAGCAATCAAAAATGCTGTC
CAGGCGGGTTTGGGGGTGGCCTTTTTGTCTACGGTGGCAGTGGGATCCGATGTGGAACAGGGGCGGTTCCGGAAGCTGGC
GGTGGAAGGGCTACAGATACGGCGTACCCTCTGGCTGGCTTTTAACCCGGAGCGCTATCAATCGCAGGCAGCCACCCGCT
TCCTCCAAGGGCTGCTGACCCGCCAAGACTGGCTGAAAACTCCCCCGCCCCATTTGCAGTTGATCGGCTAA

Upstream 100 bases:

>100_bases
TCTCGCTTGTTTATGATGATCTCGTGTGGGTTTCCAAACGCGGGCTGCCCAGCTTTTCAGGGAAACGTAAGGGATCCCAC
TGTGGGGTTTGGAGTTCCCT

Downstream 100 bases:

>100_bases
GTTGCGATGCGTTACGGCCTTTTCCGAGTTGATGGGATCCCAGGTAGATTCCGGTGGATTGAGCAGGATCCCTGTTCAAA
GAGATACGAGAGATATTTCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MADELPFTLDQLLIVRAIAQQGSFRRAADSLFVSQPAVSLQVQNLERQLGVVLFDRSGRKVELTDAGKVVLQYSERILKL
CREAVEALADLQKMEGGHLVLGASQTVGTYVMPSLIAQYHRRYPQISVQLLVQSTRRIAQKLVDGQLDVAIVGGEIPFEL
QRHLKVMALAEDEYVLVGAPGCAIDSPALVDLLALPFITLDPQSSTRQTIDRVLNRHGINPAQLNVRLELSSIEAIKNAV
QAGLGVAFLSTVAVGSDVEQGRFRKLAVEGLQIRRTLWLAFNPERYQSQAATRFLQGLLTRQDWLKTPPPHLQLIG

Sequences:

>Translated_316_residues
MADELPFTLDQLLIVRAIAQQGSFRRAADSLFVSQPAVSLQVQNLERQLGVVLFDRSGRKVELTDAGKVVLQYSERILKL
CREAVEALADLQKMEGGHLVLGASQTVGTYVMPSLIAQYHRRYPQISVQLLVQSTRRIAQKLVDGQLDVAIVGGEIPFEL
QRHLKVMALAEDEYVLVGAPGCAIDSPALVDLLALPFITLDPQSSTRQTIDRVLNRHGINPAQLNVRLELSSIEAIKNAV
QAGLGVAFLSTVAVGSDVEQGRFRKLAVEGLQIRRTLWLAFNPERYQSQAATRFLQGLLTRQDWLKTPPPHLQLIG
>Mature_315_residues
ADELPFTLDQLLIVRAIAQQGSFRRAADSLFVSQPAVSLQVQNLERQLGVVLFDRSGRKVELTDAGKVVLQYSERILKLC
REAVEALADLQKMEGGHLVLGASQTVGTYVMPSLIAQYHRRYPQISVQLLVQSTRRIAQKLVDGQLDVAIVGGEIPFELQ
RHLKVMALAEDEYVLVGAPGCAIDSPALVDLLALPFITLDPQSSTRQTIDRVLNRHGINPAQLNVRLELSSIEAIKNAVQ
AGLGVAFLSTVAVGSDVEQGRFRKLAVEGLQIRRTLWLAFNPERYQSQAATRFLQGLLTRQDWLKTPPPHLQLIG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=32.9896907216495, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=31.8339100346021, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790399, Length=273, Percent_Identity=27.8388278388278, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=29.0566037735849, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=29.1095890410959, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1788748, Length=257, Percent_Identity=30.3501945525292, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=26.551724137931, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787601, Length=206, Percent_Identity=28.6407766990291, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=25.3012048192771, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=29.1666666666667, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788296, Length=300, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=243, Percent_Identity=25.5144032921811, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=26.4367816091954, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789492, Length=275, Percent_Identity=26.9090909090909, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=272, Percent_Identity=31.25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=262, Percent_Identity=26.7175572519084, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788626, Length=245, Percent_Identity=30.2040816326531, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367136, Length=238, Percent_Identity=26.0504201680672, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=268, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789506, Length=176, Percent_Identity=28.9772727272727, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=261, Percent_Identity=27.2030651340996, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081978, Length=273, Percent_Identity=24.5421245421245, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=143, Percent_Identity=32.8671328671329, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787949, Length=272, Percent_Identity=24.6323529411765, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082024, Length=145, Percent_Identity=28.2758620689655, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=119, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34900; Mature: 34769

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADELPFTLDQLLIVRAIAQQGSFRRAADSLFVSQPAVSLQVQNLERQLGVVLFDRSGRK
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEECCCCCE
VELTDAGKVVLQYSERILKLCREAVEALADLQKMEGGHLVLGASQTVGTYVMPSLIAQYH
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
RRYPQISVQLLVQSTRRIAQKLVDGQLDVAIVGGEIPFELQRHLKVMALAEDEYVLVGAP
HHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHEEEEECCCEEEEECC
GCAIDSPALVDLLALPFITLDPQSSTRQTIDRVLNRHGINPAQLNVRLELSSIEAIKNAV
CCCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHH
QAGLGVAFLSTVAVGSDVEQGRFRKLAVEGLQIRRTLWLAFNPERYQSQAATRFLQGLLT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHHHHHHH
RQDWLKTPPPHLQLIG
HHHHCCCCCCCEEECC
>Mature Secondary Structure 
ADELPFTLDQLLIVRAIAQQGSFRRAADSLFVSQPAVSLQVQNLERQLGVVLFDRSGRK
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEECCCCCE
VELTDAGKVVLQYSERILKLCREAVEALADLQKMEGGHLVLGASQTVGTYVMPSLIAQYH
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
RRYPQISVQLLVQSTRRIAQKLVDGQLDVAIVGGEIPFELQRHLKVMALAEDEYVLVGAP
HHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHEEEEECCCEEEEECC
GCAIDSPALVDLLALPFITLDPQSSTRQTIDRVLNRHGINPAQLNVRLELSSIEAIKNAV
CCCCCCHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHHHHHH
QAGLGVAFLSTVAVGSDVEQGRFRKLAVEGLQIRRTLWLAFNPERYQSQAATRFLQGLLT
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHHHHHHH
RQDWLKTPPPHLQLIG
HHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA