| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609717
Identifier: 86609717
GI number: 86609717
Start: 2380544
End: 2381206
Strand: Reverse
Name: 86609717
Synonym: CYB_2275
Alternate gene names: NA
Gene position: 2381206-2380544 (Counterclockwise)
Preceding gene: 86609720
Following gene: 86609716
Centisome position: 78.16
GC content: 47.36
Gene sequence:
>663_bases ATGGCAGCACAGCAAGCTCCGGCCCGAGAGCTATTCAAGGAGGCTTTTGAGAATCGCTACACCTGGGACAAAGACTTTCC TGGCTACCGAGCTGAGATAACCTACTTTCCCAAAGAAGGTGACAGCAGCCTCTCCTTCTCAGGAGTTGTGAGTATTGACC GCAACATGAAGATCGATGTTGCCGGCGTCGAGGACGAGGAGATCCGCCAGAAAATACGGGAACAGATGTGGGAAGTCATG GTGCATCGCGTTCGTCATTCCTTCGACGAGGAACACGGTGGCCACACCTTTGCCTATGGAGAGCCACAAAATTCAGACAT CACTGAAGTTCTTGTTTCGGGCTTATCTTCTACCGATAGGTACTGGGTTCAGGGCAAGCACATTCAAATGGTACATCGCC ATCTTGCCAATCGGACAATTACAGTCTCAGTTCAAGAGTTTTACGATACAGGTGAGGGCTACCTACCCACTCACTACACT GCTGAGTATTGTAGCCCAGGAACTGGAGAAAAAACTCAAGCAAAGATGATCTACGAAGATCGTTATCAAAAAATAGGTCG GTATTGGATTCTGGTTGAGAGAAGAATTTGGGAAGAGCAGGATGGCCAAAAAAGTTCATCCCCTCAACTTTTCCTCTTCT CTAATATTCGATTTTTCGAATAG
Upstream 100 bases:
>100_bases TGAGCGGGTGGCCAGTCATAAGGAAACCTTAAAATCCCAAGGCCAGCCATCAGCCTCTACTAGGATTTAAATAGTAAAAT TTCTCATTAAGGAGGAGATT
Downstream 100 bases:
>100_bases CTGAGAAAAATAAGTTTTTCTTTGCGGCTGTGGGCATCTCTCATTATAGAAGGTGATGAGTTGCTCACAGCCAAGCTCAA AACAGATGGCCACAGGGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVM VHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYT AEYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE
Sequences:
>Translated_220_residues MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVM VHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYT AEYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE >Mature_219_residues AAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDVAGVEDEEIRQKIREQMWEVMV HRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDRYWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTA EYCSPGTGEKTQAKMIYEDRYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25830; Mature: 25699
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDV CCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEE AGVEDEEIRQKIREQMWEVMVHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDR ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCE YWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTAEYCSPGTGEKTQAKMIYED EEECCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH RYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE HHHHHCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCEECC >Mature Secondary Structure AAQQAPARELFKEAFENRYTWDKDFPGYRAEITYFPKEGDSSLSFSGVVSIDRNMKIDV CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCEEEE AGVEDEEIRQKIREQMWEVMVHRVRHSFDEEHGGHTFAYGEPQNSDITEVLVSGLSSTDR ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCE YWVQGKHIQMVHRHLANRTITVSVQEFYDTGEGYLPTHYTAEYCSPGTGEKTQAKMIYED EEECCCHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH RYQKIGRYWILVERRIWEEQDGQKSSSPQLFLFSNIRFFE HHHHHCCEEEEEEHHHHCCCCCCCCCCCEEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA