Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is yfiS [H]

Identifier: 86609512

GI number: 86609512

Start: 2160617

End: 2162161

Strand: Direct

Name: yfiS [H]

Synonym: CYB_2064

Alternate gene names: 86609512

Gene position: 2160617-2162161 (Clockwise)

Preceding gene: 86609511

Following gene: 86609513

Centisome position: 70.92

GC content: 62.14

Gene sequence:

>1545_bases
ATGACTTTGGAGCAACGATGGGGCTGGCCGGAGGGAGGGGCAGGGATCTGCCACCCCAATTCCCCTCTCCAGAATCCCCC
ACCTGCGTCAACGCCAACTTGGGGGCTGAAGTCAGAAGCTCTCTTGCCTGAGCCGACAGCAAGCCCCGCCCTCAGCTCGC
CGGAGTGTTCTCCTGGGGATCCCCTGCCGGAGCCACCTCCTGAGGATCCCGAAAAGGGGCAAAAAGCAGAGAAGGAAGAT
CAAGGTCTGTCTGAGCCGGGCCTGAGAAACTTTCTTGCCGTGCTGCGCCGACGCAATTTCCTGCTGCTGTGGATGGGGCA
GGTGTGTTCGCAGTTGGCGGACAAGGTGTTATTGGTGCTGCTGATCGGCTTGGTTGCCCGCGAATTTCAACCTGAAGGGG
CTTCCATCAGCGGTTGGGTCTCGGCCATCATGCTGGCTTTTACGCTGCCGGCGATGCTATTGGGCAGCCTGGCAGGGGTA
TTTGTGGATCGCTGGCTGAAAAAAGGGGTGTTGGTGCTCTCCAACCTGGGGCGTGGGATCCTAGTGCTGCTGTTGCCGCC
GCTGCTCTGGCTCACTGCCGGGCGCGACCTTTGGCCGGGGATCCCCTTGGGGTTTGCGGGGCTGTTGCTGGTGAGCTTTG
CCGTCTCGGTTCTAACCCAGTTTTTTGCTCCTGCCGAGCAGGCGACTTTGCCCCTGATCCTGCCGAAAGGAGAGTTGCTG
GCGGCCAACTCCCTGTACACCACCACGATGATGGCTTCGCTGATCGTCGGGTTTGCCGTGGGGGAGCCGCTGTTAACCCT
GGCGGATCGTTGGATACGCCATTGGTTGCCGGGCTGGGAAGTGGGGCCGGAGCTGTTGGTGGGAGGAGCCTACCTCTTGG
CGGGATCCCTGCTATTGCTGCTGCAACCCCACGAGAAGCTGGAGCCCCGGCGTTGGGAAGTCCCTCACCTCTGGGAAGAT
CTCCGCTTGGGCCTGCAATATGTCAGCCAGATGCCCCTGATCCGAGCTGCCTTGGTGCAGGTGGTGGTGCTTTACTCGCT
GTTTGCGGCGCTGGCAGTTTTGGCGGTGCGCATGGCTGAAGTGATGGCAGAGCTGAAGCCGGATCAGTTCGGGGTGTTGT
TGGCCGCTGCTGGCCTGGGCATGGGGATCGGCGCCTTTTGGGTGGGCCATACGGGCCGACGGGTGAGCCGCCGCGCCTGG
GTTGGCCTGGGATCCCTGCTGCTCTGTGGGGCTCTGGCAGCCCTATCCTGGACGACCCACTGGTTGCTGCCCAGCTTGGG
CTGGATTGCCCTGTTGGGCTGTGGGGGGGCTTTGGTGGCGGTGCCGATGCAAACCTTGATCCAAGAGGAAACGCCTGACC
ATCTGCGAGGCAAGATCTTTGGGCTCCAGAACAACGCCGCCAACATTGCCCTCAGTTTGCCGCTGGTGTTCACGGGATTG
GCGGAAGCCCGCCTTGGCCTTCCCTGGATGTTTGTGGCCCTGTCTGTTCTGGCGGGGCTGGCGGGGCTGTACACCTGGAG
CCTATTGGGCAGAGAGGTCTCGTAA

Upstream 100 bases:

>100_bases
TAAGATCGGGGCACCCCATTTCCACTTTTGTTTGCTGACGGGATCCCATTCTGTTGTGGGGCCGACGTCGGGGAAATGGG
CAGGTCACCTGGGGAGCATG

Downstream 100 bases:

>100_bases
ATCCTGCCGCAGCGCGAGGTTGGATATCCTCTTCCGAGGGGACGGGCCAAGGCAGGAGCTAACTCTGCTACTCTTGTAGA
GGCTTGAGCATCGAGACTCC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKED
QGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGV
FVDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL
AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWED
LRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAW
VGLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL
AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS

Sequences:

>Translated_514_residues
MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKED
QGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGV
FVDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL
AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWED
LRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAW
VGLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL
AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS
>Mature_513_residues
TLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKEDQ
GLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVF
VDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELLA
ANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWEDL
RLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWV
GLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGLA
EARLGLPWMFVALSVLAGLAGLYTWSLLGREVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 55304; Mature: 55173

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLPEPPPEDPEKGQKAEKEDQGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVL
CCCCCCCCCCHHCCCCCHHHCCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH
LIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVFVDRWLKKGVLVLSNLGRGI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH
LVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEE
AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLL
ECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LQPHEKLEPRRWEVPHLWEDLRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWVGLGSLLLCGALAALSWTTH
HHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEEEHHHHHHHH
AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLPEPPPEDPEKGQKAEKEDQGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVL
CCCCCCCCCCHHCCCCCHHHCCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH
LIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVFVDRWLKKGVLVLSNLGRGI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH
LVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEE
AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLL
ECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
LQPHEKLEPRRWEVPHLWEDLRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAE
CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWVGLGSLLLCGALAALSWTTH
HHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEEEHHHHHHHH
AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]