| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is yfiS [H]
Identifier: 86609512
GI number: 86609512
Start: 2160617
End: 2162161
Strand: Direct
Name: yfiS [H]
Synonym: CYB_2064
Alternate gene names: 86609512
Gene position: 2160617-2162161 (Clockwise)
Preceding gene: 86609511
Following gene: 86609513
Centisome position: 70.92
GC content: 62.14
Gene sequence:
>1545_bases ATGACTTTGGAGCAACGATGGGGCTGGCCGGAGGGAGGGGCAGGGATCTGCCACCCCAATTCCCCTCTCCAGAATCCCCC ACCTGCGTCAACGCCAACTTGGGGGCTGAAGTCAGAAGCTCTCTTGCCTGAGCCGACAGCAAGCCCCGCCCTCAGCTCGC CGGAGTGTTCTCCTGGGGATCCCCTGCCGGAGCCACCTCCTGAGGATCCCGAAAAGGGGCAAAAAGCAGAGAAGGAAGAT CAAGGTCTGTCTGAGCCGGGCCTGAGAAACTTTCTTGCCGTGCTGCGCCGACGCAATTTCCTGCTGCTGTGGATGGGGCA GGTGTGTTCGCAGTTGGCGGACAAGGTGTTATTGGTGCTGCTGATCGGCTTGGTTGCCCGCGAATTTCAACCTGAAGGGG CTTCCATCAGCGGTTGGGTCTCGGCCATCATGCTGGCTTTTACGCTGCCGGCGATGCTATTGGGCAGCCTGGCAGGGGTA TTTGTGGATCGCTGGCTGAAAAAAGGGGTGTTGGTGCTCTCCAACCTGGGGCGTGGGATCCTAGTGCTGCTGTTGCCGCC GCTGCTCTGGCTCACTGCCGGGCGCGACCTTTGGCCGGGGATCCCCTTGGGGTTTGCGGGGCTGTTGCTGGTGAGCTTTG CCGTCTCGGTTCTAACCCAGTTTTTTGCTCCTGCCGAGCAGGCGACTTTGCCCCTGATCCTGCCGAAAGGAGAGTTGCTG GCGGCCAACTCCCTGTACACCACCACGATGATGGCTTCGCTGATCGTCGGGTTTGCCGTGGGGGAGCCGCTGTTAACCCT GGCGGATCGTTGGATACGCCATTGGTTGCCGGGCTGGGAAGTGGGGCCGGAGCTGTTGGTGGGAGGAGCCTACCTCTTGG CGGGATCCCTGCTATTGCTGCTGCAACCCCACGAGAAGCTGGAGCCCCGGCGTTGGGAAGTCCCTCACCTCTGGGAAGAT CTCCGCTTGGGCCTGCAATATGTCAGCCAGATGCCCCTGATCCGAGCTGCCTTGGTGCAGGTGGTGGTGCTTTACTCGCT GTTTGCGGCGCTGGCAGTTTTGGCGGTGCGCATGGCTGAAGTGATGGCAGAGCTGAAGCCGGATCAGTTCGGGGTGTTGT TGGCCGCTGCTGGCCTGGGCATGGGGATCGGCGCCTTTTGGGTGGGCCATACGGGCCGACGGGTGAGCCGCCGCGCCTGG GTTGGCCTGGGATCCCTGCTGCTCTGTGGGGCTCTGGCAGCCCTATCCTGGACGACCCACTGGTTGCTGCCCAGCTTGGG CTGGATTGCCCTGTTGGGCTGTGGGGGGGCTTTGGTGGCGGTGCCGATGCAAACCTTGATCCAAGAGGAAACGCCTGACC ATCTGCGAGGCAAGATCTTTGGGCTCCAGAACAACGCCGCCAACATTGCCCTCAGTTTGCCGCTGGTGTTCACGGGATTG GCGGAAGCCCGCCTTGGCCTTCCCTGGATGTTTGTGGCCCTGTCTGTTCTGGCGGGGCTGGCGGGGCTGTACACCTGGAG CCTATTGGGCAGAGAGGTCTCGTAA
Upstream 100 bases:
>100_bases TAAGATCGGGGCACCCCATTTCCACTTTTGTTTGCTGACGGGATCCCATTCTGTTGTGGGGCCGACGTCGGGGAAATGGG CAGGTCACCTGGGGAGCATG
Downstream 100 bases:
>100_bases ATCCTGCCGCAGCGCGAGGTTGGATATCCTCTTCCGAGGGGACGGGCCAAGGCAGGAGCTAACTCTGCTACTCTTGTAGA GGCTTGAGCATCGAGACTCC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKED QGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGV FVDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWED LRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAW VGLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS
Sequences:
>Translated_514_residues MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKED QGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGV FVDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWED LRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAW VGLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS >Mature_513_residues TLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGDPLPEPPPEDPEKGQKAEKEDQ GLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVLLIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVF VDRWLKKGVLVLSNLGRGILVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELLA ANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLLLQPHEKLEPRRWEVPHLWEDL RLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAEVMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWV GLGSLLLCGALAALSWTTHWLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGLA EARLGLPWMFVALSVLAGLAGLYTWSLLGREVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 55304; Mature: 55173
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PLPEPPPEDPEKGQKAEKEDQGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVL CCCCCCCCCCHHCCCCCHHHCCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH LIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVFVDRWLKKGVLVLSNLGRGI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH LVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEE AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLL ECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH LQPHEKLEPRRWEVPHLWEDLRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAE CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWVGLGSLLLCGALAALSWTTH HHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEEEHHHHHHHH AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TLEQRWGWPEGGAGICHPNSPLQNPPPASTPTWGLKSEALLPEPTASPALSSPECSPGD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PLPEPPPEDPEKGQKAEKEDQGLSEPGLRNFLAVLRRRNFLLLWMGQVCSQLADKVLLVL CCCCCCCCCCHHCCCCCHHHCCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHH LIGLVAREFQPEGASISGWVSAIMLAFTLPAMLLGSLAGVFVDRWLKKGVLVLSNLGRGI HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHH LVLLLPPLLWLTAGRDLWPGIPLGFAGLLLVSFAVSVLTQFFAPAEQATLPLILPKGELL HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCEE AANSLYTTTMMASLIVGFAVGEPLLTLADRWIRHWLPGWEVGPELLVGGAYLLAGSLLLL ECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH LQPHEKLEPRRWEVPHLWEDLRLGLQYVSQMPLIRAALVQVVVLYSLFAALAVLAVRMAE CCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMAELKPDQFGVLLAAAGLGMGIGAFWVGHTGRRVSRRAWVGLGSLLLCGALAALSWTTH HHHHCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH WLLPSLGWIALLGCGGALVAVPMQTLIQEETPDHLRGKIFGLQNNAANIALSLPLVFTGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCEEEEHHHHHHHH AEARLGLPWMFVALSVLAGLAGLYTWSLLGREVS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]