Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609452

Identifier: 86609452

GI number: 86609452

Start: 2108476

End: 2109072

Strand: Direct

Name: 86609452

Synonym: CYB_2003

Alternate gene names: NA

Gene position: 2108476-2109072 (Clockwise)

Preceding gene: 86609451

Following gene: 86609454

Centisome position: 69.21

GC content: 51.59

Gene sequence:

>597_bases
ATGGTCAGTCTATCTGCCAAGCCTCTAACTCTGGAAGACTTTCTACAACAGCCGGAAACTCAGCCCGCCAGCGAGTTCAT
CAAAGGAGAAATTATCCAGAAGCCCATGCCACAGGGAAAACATAGCCGTCTCCAACTAAAACTGGGTAGCTTCATTAACG
AGATGTTGGAGCCTTCTCAACTGGGAATGGCATTTCCAGAGCTACGCTGCACCTTTGCCGGATATGCGATTGTACCGGAT
ATTTCTGTAATCGCCTGGGATCGGATCCCTGTGGATGAAGATGGCACCATTCAAAATCTCATCCCCTTTTGCCCGGATTG
GATGATCGAGATTCTCTCTCCCGATCAAAATCCAATGAAGCTGGTCAAAAAAATCTTGATCGGCCTGGATCACGGCTGCC
AAATGGGGTGGGTGGTGGATCCCGAAGAAAGGGTTGTTTTCGCCTACCCTGCCGGGCAGCAGCCGACGGTGCATGAGGAT
CCCCAAGAGGTGGTCCCCACTCCTGCGTTTGCCCAAGGGATCCAACTGACAATCGCAACTTTGTTCGGCTGGATGCAAGT
TCAAGCTGGCGAGAGCCACAAGTCCAATAGGGGATAG

Upstream 100 bases:

>100_bases
TGACTTGGCAACAACGTGACAGGGATCTGTTTTGATTTGATCAGCTTTGATACTTTCTCAGTCTATTGTTAATCGGATAG
CAGCGTGATGGGAGAAAGCC

Downstream 100 bases:

>100_bases
AAAGAGAGTGGATCCCTTTCCGACCCTCAGTTCTCATCTCAATTCAACATTATTATTCAGTTGTTGTAGAGGGCAGGAGC
TTGGGCAACCGTCTCACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MVSLSAKPLTLEDFLQQPETQPASEFIKGEIIQKPMPQGKHSRLQLKLGSFINEMLEPSQLGMAFPELRCTFAGYAIVPD
ISVIAWDRIPVDEDGTIQNLIPFCPDWMIEILSPDQNPMKLVKKILIGLDHGCQMGWVVDPEERVVFAYPAGQQPTVHED
PQEVVPTPAFAQGIQLTIATLFGWMQVQAGESHKSNRG

Sequences:

>Translated_198_residues
MVSLSAKPLTLEDFLQQPETQPASEFIKGEIIQKPMPQGKHSRLQLKLGSFINEMLEPSQLGMAFPELRCTFAGYAIVPD
ISVIAWDRIPVDEDGTIQNLIPFCPDWMIEILSPDQNPMKLVKKILIGLDHGCQMGWVVDPEERVVFAYPAGQQPTVHED
PQEVVPTPAFAQGIQLTIATLFGWMQVQAGESHKSNRG
>Mature_198_residues
MVSLSAKPLTLEDFLQQPETQPASEFIKGEIIQKPMPQGKHSRLQLKLGSFINEMLEPSQLGMAFPELRCTFAGYAIVPD
ISVIAWDRIPVDEDGTIQNLIPFCPDWMIEILSPDQNPMKLVKKILIGLDHGCQMGWVVDPEERVVFAYPAGQQPTVHED
PQEVVPTPAFAQGIQLTIATLFGWMQVQAGESHKSNRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22049; Mature: 22049

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLSAKPLTLEDFLQQPETQPASEFIKGEIIQKPMPQGKHSRLQLKLGSFINEMLEPSQ
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCHHH
LGMAFPELRCTFAGYAIVPDISVIAWDRIPVDEDGTIQNLIPFCPDWMIEILSPDQNPMK
HCCCCHHHHHHHCCEEECCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCHHH
LVKKILIGLDHGCQMGWVVDPEERVVFAYPAGQQPTVHEDPQEVVPTPAFAQGIQLTIAT
HHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
LFGWMQVQAGESHKSNRG
HHHHHHEECCCCCCCCCC
>Mature Secondary Structure
MVSLSAKPLTLEDFLQQPETQPASEFIKGEIIQKPMPQGKHSRLQLKLGSFINEMLEPSQ
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHCCHHH
LGMAFPELRCTFAGYAIVPDISVIAWDRIPVDEDGTIQNLIPFCPDWMIEILSPDQNPMK
HCCCCHHHHHHHCCEEECCCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCHHH
LVKKILIGLDHGCQMGWVVDPEERVVFAYPAGQQPTVHEDPQEVVPTPAFAQGIQLTIAT
HHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
LFGWMQVQAGESHKSNRG
HHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA