| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is arnT [H]
Identifier: 86609444
GI number: 86609444
Start: 2100627
End: 2102354
Strand: Reverse
Name: arnT [H]
Synonym: CYB_1995
Alternate gene names: 86609444
Gene position: 2102354-2100627 (Counterclockwise)
Preceding gene: 86609445
Following gene: 86609443
Centisome position: 69.0
GC content: 61.86
Gene sequence:
>1728_bases ATGCCTAGCTTTCTGGGCCGCCTCAAGGGATCCCTGGGGATGGGGCTTTTGGCCGGCCTGTGGCTGTGGGTAGGTCAGGG GATCCCCTACCTGTTCGACTGGGATGAGCTGATCTACGCCAGCTTGGCGCGGCAGATGCTGGCCAGCGGGGATCCTTTCT CGTTGGCCATCAACGGGGAGCCTTTTTTCGAGAAGCCCCCTCTCTTTTTTTGGCTGCAGGCCCTGTCCATGGCTGTTTTA GGGATGAACGAAGGGGCAGCGCGCTTGCCCAATGCTTTTGCTGGCGGGATCACGGTGGCGCTGCTGGTGGGGTGGGGATC CCATCTGCGTGGGGTGGGGTTTGGCTGCCTGTGGGGGATCCTACTGCTGACAGGCTACCTGCCCTTGTTTTTTTACAAAA CTGGTCTCATCGACCCGCTACTCAACCTGGGCATGGGGGTGGGTCTGGGATCCCTTTGGGCCGCCGAGGAGGCCTGGCGG GCCGGGTACTCTGGACGCAGGTGGAGAGCGGTGGGGGCGCTGGCCCTGGGCTTGGCAGTGTTGGCCAAAGGGCCGGTGGG GCTGGTGTTGCCCCTGGCTATCTGGATCCTCTACAAGCTCTGGCAACGGGATCCTCCCCTTCGATGGGGGGAGAGCCTGG TTTTCCTCAGCCTAGCTGTGACTGTTCCCCTCACTTGGCTGGCGTTGGAGGGGGTGCAACGGGGGCCAGAATGGGTGGAA GAGTTTGGGCGCTACCAATGGCGCATCCTCACCAGCTCAGATGGGCATCCCGGCCCGGTTTATTTTCATCTGTTGGCCTT TGCCCTGGGGTGCTTTCCCTGGGGCGCTCTGGCTTTGGCCGAGATCCTGCAGCCCATCCCCAGGAGCGTGGGCTCGGTGG ATTTGACTCGGCGGGCAGAATCTCTGCTGTTGGTGGCTTTTGGGGTGGTGCTGGCCCTGTTTTCGCTGCTGGTGCAAACC AAGCTGGTTCACTACACCTCGCTGCTGTACCCCATTGGGGCCTACTTTGCTGCCCTGCGCTTGCAGCGCCTGGTTGCTGA GAAAAGAGGGCCCAGTTTTTGGGAAAGTGCCTGGATCCTGCTCAGTGGCTTGTTTTGGCTGGCCCTGTGGCTGTTGCTGC CCTGGCTGGGATCCCAGGACCCCGCTGGGCTAGTCCAAGCATGGGTCTTTGCCGGCATCCCTGACGACTTTTCCAGCAGC TTGGTGCTGGGATACCTGCAGGCTGAGGTGGAGTGGCCGGTGTTGACCTACGTCCCCGCCGCGATCCTGCTGCTGGGAAT TCTCCTTTGGAGTCGAGGACGGCGGCGGGCTTGGGGCTGGACAGTTTTGCTCTTGGCCACGGGACTGAGCGCCCAACTGG CCTGGTGCTGGGTCTTCCCCCGCCTGCTGCAACACACCCAGGGAGGAGCCGTCCACTTTTTCCGGCAGTTTGCCACTTCC GAAAACAACGCCCAGCCGGCTCTCTCTGGAACGGTGGGCCTGTACGGCTTTCGCTCTTTTGTACCCTATTTTTATGGCCC GCTGCAGGTTCCCTACGCCGCCAGCCCAGAAGAGCTGGCCGACTGGCAAGCCCAGGGGCAGGCGCCCGACTACCTGGTTA CCTGGGATCCCTTTGTAGCTGAACTTACAGCTCCCGAGGGCGAACAGGCAGCCATTCTGGGATCTTGGCGGGTCGTCGAG CGCCGCAGTCCCTTTTGGCTGTTGAAAAAAACCTCTTCTCCTCCCTAG
Upstream 100 bases:
>100_bases ATTCCGGTAGAGACAGAGGGATCCGCTCTGGCAGCCCAGTTGCTCCGCCTCCTGCGCTCGCCTCAGAGCGTGGGCCGGGT GGTGTCTTCAGAAGCTTTCC
Downstream 100 bases:
>100_bases GCCCCAGATGAGCCAGTACGTGCTGCGCATCAGCGATATTCCTGCCCAAGATCGTCCCCGCGAGCGGCTGCTCAGCCAAG GGGCAAGGCACCTCTCCCAC
Product: dolichyl-phosphate-mannose-protein mannosyltransferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MPSFLGRLKGSLGMGLLAGLWLWVGQGIPYLFDWDELIYASLARQMLASGDPFSLAINGEPFFEKPPLFFWLQALSMAVL GMNEGAARLPNAFAGGITVALLVGWGSHLRGVGFGCLWGILLLTGYLPLFFYKTGLIDPLLNLGMGVGLGSLWAAEEAWR AGYSGRRWRAVGALALGLAVLAKGPVGLVLPLAIWILYKLWQRDPPLRWGESLVFLSLAVTVPLTWLALEGVQRGPEWVE EFGRYQWRILTSSDGHPGPVYFHLLAFALGCFPWGALALAEILQPIPRSVGSVDLTRRAESLLLVAFGVVLALFSLLVQT KLVHYTSLLYPIGAYFAALRLQRLVAEKRGPSFWESAWILLSGLFWLALWLLLPWLGSQDPAGLVQAWVFAGIPDDFSSS LVLGYLQAEVEWPVLTYVPAAILLLGILLWSRGRRRAWGWTVLLLATGLSAQLAWCWVFPRLLQHTQGGAVHFFRQFATS ENNAQPALSGTVGLYGFRSFVPYFYGPLQVPYAASPEELADWQAQGQAPDYLVTWDPFVAELTAPEGEQAAILGSWRVVE RRSPFWLLKKTSSPP
Sequences:
>Translated_575_residues MPSFLGRLKGSLGMGLLAGLWLWVGQGIPYLFDWDELIYASLARQMLASGDPFSLAINGEPFFEKPPLFFWLQALSMAVL GMNEGAARLPNAFAGGITVALLVGWGSHLRGVGFGCLWGILLLTGYLPLFFYKTGLIDPLLNLGMGVGLGSLWAAEEAWR AGYSGRRWRAVGALALGLAVLAKGPVGLVLPLAIWILYKLWQRDPPLRWGESLVFLSLAVTVPLTWLALEGVQRGPEWVE EFGRYQWRILTSSDGHPGPVYFHLLAFALGCFPWGALALAEILQPIPRSVGSVDLTRRAESLLLVAFGVVLALFSLLVQT KLVHYTSLLYPIGAYFAALRLQRLVAEKRGPSFWESAWILLSGLFWLALWLLLPWLGSQDPAGLVQAWVFAGIPDDFSSS LVLGYLQAEVEWPVLTYVPAAILLLGILLWSRGRRRAWGWTVLLLATGLSAQLAWCWVFPRLLQHTQGGAVHFFRQFATS ENNAQPALSGTVGLYGFRSFVPYFYGPLQVPYAASPEELADWQAQGQAPDYLVTWDPFVAELTAPEGEQAAILGSWRVVE RRSPFWLLKKTSSPP >Mature_574_residues PSFLGRLKGSLGMGLLAGLWLWVGQGIPYLFDWDELIYASLARQMLASGDPFSLAINGEPFFEKPPLFFWLQALSMAVLG MNEGAARLPNAFAGGITVALLVGWGSHLRGVGFGCLWGILLLTGYLPLFFYKTGLIDPLLNLGMGVGLGSLWAAEEAWRA GYSGRRWRAVGALALGLAVLAKGPVGLVLPLAIWILYKLWQRDPPLRWGESLVFLSLAVTVPLTWLALEGVQRGPEWVEE FGRYQWRILTSSDGHPGPVYFHLLAFALGCFPWGALALAEILQPIPRSVGSVDLTRRAESLLLVAFGVVLALFSLLVQTK LVHYTSLLYPIGAYFAALRLQRLVAEKRGPSFWESAWILLSGLFWLALWLLLPWLGSQDPAGLVQAWVFAGIPDDFSSSL VLGYLQAEVEWPVLTYVPAAILLLGILLWSRGRRRAWGWTVLLLATGLSAQLAWCWVFPRLLQHTQGGAVHFFRQFATSE NNAQPALSGTVGLYGFRSFVPYFYGPLQVPYAASPEELADWQAQGQAPDYLVTWDPFVAELTAPEGEQAAILGSWRVVER RSPFWLLKKTSSPP
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=252, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 63454; Mature: 63323
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSFLGRLKGSLGMGLLAGLWLWVGQGIPYLFDWDELIYASLARQMLASGDPFSLAINGE CCCHHHHHCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCEEEEECCC PFFEKPPLFFWLQALSMAVLGMNEGAARLPNAFAGGITVALLVGWGSHLRGVGFGCLWGI CCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHH LLLTGYLPLFFYKTGLIDPLLNLGMGVGLGSLWAAEEAWRAGYSGRRWRAVGALALGLAV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LAKGPVGLVLPLAIWILYKLWQRDPPLRWGESLVFLSLAVTVPLTWLALEGVQRGPEWVE HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH EFGRYQWRILTSSDGHPGPVYFHLLAFALGCFPWGALALAEILQPIPRSVGSVDLTRRAE HHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH SLLLVAFGVVLALFSLLVQTKLVHYTSLLYPIGAYFAALRLQRLVAEKRGPSFWESAWIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LSGLFWLALWLLLPWLGSQDPAGLVQAWVFAGIPDDFSSSLVLGYLQAEVEWPVLTYVPA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH AILLLGILLWSRGRRRAWGWTVLLLATGLSAQLAWCWVFPRLLQHTQGGAVHFFRQFATS HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC ENNAQPALSGTVGLYGFRSFVPYFYGPLQVPYAASPEELADWQAQGQAPDYLVTWDPFVA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHH ELTAPEGEQAAILGSWRVVERRSPFWLLKKTSSPP HCCCCCCCCEEEEECEEEEECCCCEEEEECCCCCC >Mature Secondary Structure PSFLGRLKGSLGMGLLAGLWLWVGQGIPYLFDWDELIYASLARQMLASGDPFSLAINGE CCHHHHHCCCCCHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCEEEEECCC PFFEKPPLFFWLQALSMAVLGMNEGAARLPNAFAGGITVALLVGWGSHLRGVGFGCLWGI CCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHH LLLTGYLPLFFYKTGLIDPLLNLGMGVGLGSLWAAEEAWRAGYSGRRWRAVGALALGLAV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LAKGPVGLVLPLAIWILYKLWQRDPPLRWGESLVFLSLAVTVPLTWLALEGVQRGPEWVE HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH EFGRYQWRILTSSDGHPGPVYFHLLAFALGCFPWGALALAEILQPIPRSVGSVDLTRRAE HHCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHH SLLLVAFGVVLALFSLLVQTKLVHYTSLLYPIGAYFAALRLQRLVAEKRGPSFWESAWIL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LSGLFWLALWLLLPWLGSQDPAGLVQAWVFAGIPDDFSSSLVLGYLQAEVEWPVLTYVPA HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH AILLLGILLWSRGRRRAWGWTVLLLATGLSAQLAWCWVFPRLLQHTQGGAVHFFRQFATS HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC ENNAQPALSGTVGLYGFRSFVPYFYGPLQVPYAASPEELADWQAQGQAPDYLVTWDPFVA CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCHHHH ELTAPEGEQAAILGSWRVVERRSPFWLLKKTSSPP HCCCCCCCCEEEEECEEEEECCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA