Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86609445

Identifier: 86609445

GI number: 86609445

Start: 2102347

End: 2103408

Strand: Reverse

Name: 86609445

Synonym: CYB_1996

Alternate gene names: NA

Gene position: 2103408-2102347 (Counterclockwise)

Preceding gene: 86609446

Following gene: 86609444

Centisome position: 69.04

GC content: 62.43

Gene sequence:

>1062_bases
ATGCCTTGGGATCTGGGGCGGTTCTGGAACACGCTCACCTACTATGAGGCCCTGCCTTTGGCGGAGGTGTGGCGTCGGGT
TCAAAATGGGTTCCAGGCCGTGGAGGATGATTTTGTGCCACCTTCTCTTTCCGAGCCGGTCGCTATCCAGATAGGGGTGG
TGGGGGAAGGTTTGCCTGACGGGTTGGCGGAGGCCCTGCGGCAGCAGGGCGTGGAGGTGAGCCATACGCCAGATTGGGCG
ACAGCAACCGTGATCCTAGGTTTGGGGGATCCACCAACGGCCAAGGCTTATCTGGAGCAATTGCGCAGCAGTGGGCAAAC
GGAGCGGATGCTGTTCGACTTTCGCCGGCCCAACCCAGATCTGAACCGGTTTTGGGGCATTTTGGACGATGTGGTCATGG
GAGGGGTGAGCCAAAGCCAGTTGCAGTGGGGGGAGGGGCAGCTTCTGTTTACAGGGCAAGTTTCCACGGCCAACTTTGGG
GGGTTTGTTTCCACGCGCACCCGCAATTGGCAGCCGCCGCTGGACTTGTCGGGGTTTGCCGGTCTGGAGCTGCGCCTGCG
AGGGGATGGGCAGCGGTATAAGGTCTTACTGCGGGATCAAGGCGGCTGGGACAGCCCCGCCTACGGCTATGCGTTCGACA
CTGCGCCGGGAGAAGAGCAGACCGTTCAGATCCCCTTTGCGGAGATGGTTGCCACGTTCCGCGCCCGCCGGGTTTCTGCT
CCCCCTCTCAATAGTCGCCAGATCTACTCGCTGCAACTGATGCTAAGCAAGTTCGAGGCCGATGGCAGCCCAAACCCCCG
CTTCCGGCCTGGGCCCTTTCAGCTGGCCGTGCGCTGGATTGGGCTGTATCGTCGGGAGCCTCTGCCGCAATTGATCGGGG
TGGCGCGGGGATCCCTTGCCCCGGAGTGGATAGCTGCCCTGCAGGGTAGCTCCAGCCGTTGGTGTGGGGTGGAGATTCCG
GTAGAGACAGAGGGATCCGCTCTGGCAGCCCAGTTGCTCCGCCTCCTGCGCTCGCCTCAGAGCGTGGGCCGGGTGGTGTC
TTCAGAAGCTTTCCATGCCTAG

Upstream 100 bases:

>100_bases
TGGATCGCTTTTTAGACGTGTTGGCAGAAGCGGTGGAGTTCTTCGGCGCTGCCCTAAGCTAGGGATCCGGGATAGACCTC
TGAAGAGATGAGGTAGACTC

Downstream 100 bases:

>100_bases
CTTTCTGGGCCGCCTCAAGGGATCCCTGGGGATGGGGCTTTTGGCCGGCCTGTGGCTGTGGGTAGGTCAGGGGATCCCCT
ACCTGTTCGACTGGGATGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWA
TATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFG
GFVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA
PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIP
VETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA

Sequences:

>Translated_353_residues
MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWA
TATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFG
GFVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA
PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIP
VETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA
>Mature_352_residues
PWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWAT
ATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGG
FVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSAP
PLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIPV
ETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39043; Mature: 38911

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPD
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCH
GLAEALRQQGVEVSHTPDWATATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPD
HHHHHHHHCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC
LNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGGFVSTRTRNWQPPLDLSGFA
HHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC
GLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA
CEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCC
PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLA
CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
PEWIAALQGSSSRWCGVEIPVETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA
HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPD
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCH
GLAEALRQQGVEVSHTPDWATATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPD
HHHHHHHHCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC
LNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGGFVSTRTRNWQPPLDLSGFA
HHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC
GLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA
CEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCC
PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLA
CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
PEWIAALQGSSSRWCGVEIPVETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA
HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA