| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86609445
Identifier: 86609445
GI number: 86609445
Start: 2102347
End: 2103408
Strand: Reverse
Name: 86609445
Synonym: CYB_1996
Alternate gene names: NA
Gene position: 2103408-2102347 (Counterclockwise)
Preceding gene: 86609446
Following gene: 86609444
Centisome position: 69.04
GC content: 62.43
Gene sequence:
>1062_bases ATGCCTTGGGATCTGGGGCGGTTCTGGAACACGCTCACCTACTATGAGGCCCTGCCTTTGGCGGAGGTGTGGCGTCGGGT TCAAAATGGGTTCCAGGCCGTGGAGGATGATTTTGTGCCACCTTCTCTTTCCGAGCCGGTCGCTATCCAGATAGGGGTGG TGGGGGAAGGTTTGCCTGACGGGTTGGCGGAGGCCCTGCGGCAGCAGGGCGTGGAGGTGAGCCATACGCCAGATTGGGCG ACAGCAACCGTGATCCTAGGTTTGGGGGATCCACCAACGGCCAAGGCTTATCTGGAGCAATTGCGCAGCAGTGGGCAAAC GGAGCGGATGCTGTTCGACTTTCGCCGGCCCAACCCAGATCTGAACCGGTTTTGGGGCATTTTGGACGATGTGGTCATGG GAGGGGTGAGCCAAAGCCAGTTGCAGTGGGGGGAGGGGCAGCTTCTGTTTACAGGGCAAGTTTCCACGGCCAACTTTGGG GGGTTTGTTTCCACGCGCACCCGCAATTGGCAGCCGCCGCTGGACTTGTCGGGGTTTGCCGGTCTGGAGCTGCGCCTGCG AGGGGATGGGCAGCGGTATAAGGTCTTACTGCGGGATCAAGGCGGCTGGGACAGCCCCGCCTACGGCTATGCGTTCGACA CTGCGCCGGGAGAAGAGCAGACCGTTCAGATCCCCTTTGCGGAGATGGTTGCCACGTTCCGCGCCCGCCGGGTTTCTGCT CCCCCTCTCAATAGTCGCCAGATCTACTCGCTGCAACTGATGCTAAGCAAGTTCGAGGCCGATGGCAGCCCAAACCCCCG CTTCCGGCCTGGGCCCTTTCAGCTGGCCGTGCGCTGGATTGGGCTGTATCGTCGGGAGCCTCTGCCGCAATTGATCGGGG TGGCGCGGGGATCCCTTGCCCCGGAGTGGATAGCTGCCCTGCAGGGTAGCTCCAGCCGTTGGTGTGGGGTGGAGATTCCG GTAGAGACAGAGGGATCCGCTCTGGCAGCCCAGTTGCTCCGCCTCCTGCGCTCGCCTCAGAGCGTGGGCCGGGTGGTGTC TTCAGAAGCTTTCCATGCCTAG
Upstream 100 bases:
>100_bases TGGATCGCTTTTTAGACGTGTTGGCAGAAGCGGTGGAGTTCTTCGGCGCTGCCCTAAGCTAGGGATCCGGGATAGACCTC TGAAGAGATGAGGTAGACTC
Downstream 100 bases:
>100_bases CTTTCTGGGCCGCCTCAAGGGATCCCTGGGGATGGGGCTTTTGGCCGGCCTGTGGCTGTGGGTAGGTCAGGGGATCCCCT ACCTGTTCGACTGGGATGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWA TATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFG GFVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIP VETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA
Sequences:
>Translated_353_residues MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWA TATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFG GFVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIP VETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA >Mature_352_residues PWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPDGLAEALRQQGVEVSHTPDWAT ATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPDLNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGG FVSTRTRNWQPPLDLSGFAGLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSAP PLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLAPEWIAALQGSSSRWCGVEIPV ETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39043; Mature: 38911
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPD CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCH GLAEALRQQGVEVSHTPDWATATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPD HHHHHHHHCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC LNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGGFVSTRTRNWQPPLDLSGFA HHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC GLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA CEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCC PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLA CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC PEWIAALQGSSSRWCGVEIPVETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC >Mature Secondary Structure PWDLGRFWNTLTYYEALPLAEVWRRVQNGFQAVEDDFVPPSLSEPVAIQIGVVGEGLPD CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCH GLAEALRQQGVEVSHTPDWATATVILGLGDPPTAKAYLEQLRSSGQTERMLFDFRRPNPD HHHHHHHHCCCEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC LNRFWGILDDVVMGGVSQSQLQWGEGQLLFTGQVSTANFGGFVSTRTRNWQPPLDLSGFA HHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCC GLELRLRGDGQRYKVLLRDQGGWDSPAYGYAFDTAPGEEQTVQIPFAEMVATFRARRVSA CEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHCCC PPLNSRQIYSLQLMLSKFEADGSPNPRFRPGPFQLAVRWIGLYRREPLPQLIGVARGSLA CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC PEWIAALQGSSSRWCGVEIPVETEGSALAAQLLRLLRSPQSVGRVVSSEAFHA HHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA