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The map label for this gene is radC [C]

Identifier: 86609443

GI number: 86609443

Start: 2099888

End: 2100607

Strand: Reverse

Name: radC [C]

Synonym: CYB_1994

Alternate gene names: 86609443

Gene position: 2100607-2099888 (Counterclockwise)

Preceding gene: 86609444

Following gene: 86609439

Centisome position: 68.95

GC content: 61.81

Gene sequence:

>720_bases
GTGCTGCGCATCAGCGATATTCCTGCCCAAGATCGTCCCCGCGAGCGGCTGCTCAGCCAAGGGGCAAGGCACCTCTCCCA
CGCCGAGCTGCTGGCCATCTTGCTCAACACTGGCCAGGGGCCAGGCAAGCTCTCGGCAGTCGGCCTCGCCCAGTTGCTCC
TGAAAAAATTGGAAGCCCAAGGAGATCCCTTGGCCCAACTGCGCCAGGTGGAGGCAGGGGAGCTGCTGCAAATTGAAGGC
ATTGGCCCGGCCAAGGCAGCCACAGTGTTGGCCGCCATCGAGCTGGGACGACGGGTGTTTTTGAGTCGTCCGCCAGACCG
GACAGCCATTGAGTCGCCAGAACAAGCGGCTATGGCTCTGAGTGGTGACTTGATGTGGGAATCTCAAGAGCACTTTGCCG
TCTTGCACTTGGATGTCAAGCACCGTCTGCTCAGCCAGCAGATTGTAACCCGGGGCACCGCCACCGAAACCCTGTCTCAT
CCGCGGGAGACTTTCCGCAGCGCCATCAAACAGGGGGCCAGTCGCATCCTCGTCGCCCACAACCACCCTTCCGGGAGCTT
GGATCCCAGCCCAGAAGACCTTGCCCTTACCCGGCAACTCTTGCAAGCGGGGCAACTGCTGCAGATCCCGGTCTTGGATC
ACCTTATCCTCGGCGGCGGACAGTTCCTCAGCTTGCGCCAGCGCACCAACCTTTGGCAGGAGTTTCCCCAGCCGGAGTAG

Upstream 100 bases:

>100_bases
GCAGCCATTCTGGGATCTTGGCGGGTCGTCGAGCGCCGCAGTCCCTTTTGGCTGTTGAAAAAAACCTCTTCTCCTCCCTA
GGCCCCAGATGAGCCAGTAC

Downstream 100 bases:

>100_bases
TCTTCACCCCCAGCCTTTCTCCCAGAGAGAGAGAGTAGAATCAAGGCAACGGACAGGTTCGCCGTCTTTGGGTTGACCAC
GCCCAAGGGATCCCTGTGTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MLRISDIPAQDRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQGDPLAQLRQVEAGELLQIEG
IGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMALSGDLMWESQEHFAVLHLDVKHRLLSQQIVTRGTATETLSH
PRETFRSAIKQGASRILVAHNHPSGSLDPSPEDLALTRQLLQAGQLLQIPVLDHLILGGGQFLSLRQRTNLWQEFPQPE

Sequences:

>Translated_239_residues
MLRISDIPAQDRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQGDPLAQLRQVEAGELLQIEG
IGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMALSGDLMWESQEHFAVLHLDVKHRLLSQQIVTRGTATETLSH
PRETFRSAIKQGASRILVAHNHPSGSLDPSPEDLALTRQLLQAGQLLQIPVLDHLILGGGQFLSLRQRTNLWQEFPQPE
>Mature_239_residues
MLRISDIPAQDRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQGDPLAQLRQVEAGELLQIEG
IGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMALSGDLMWESQEHFAVLHLDVKHRLLSQQIVTRGTATETLSH
PRETFRSAIKQGASRILVAHNHPSGSLDPSPEDLALTRQLLQAGQLLQIPVLDHLILGGGQFLSLRQRTNLWQEFPQPE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=216, Percent_Identity=35.6481481481481, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI2367100, Length=97, Percent_Identity=43.298969072165, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788312, Length=97, Percent_Identity=41.2371134020619, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788997, Length=97, Percent_Identity=40.2061855670103, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466; PF00633 HHH [H]

EC number: NA

Molecular weight: Translated: 26137; Mature: 26137

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRISDIPAQDRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
GDPLAQLRQVEAGELLQIEGIGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMAL
CCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
SGDLMWESQEHFAVLHLDVKHRLLSQQIVTRGTATETLSHPRETFRSAIKQGASRILVAH
HCCCEECCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHEEEEEE
NHPSGSLDPSPEDLALTRQLLQAGQLLQIPVLDHLILGGGQFLSLRQRTNLWQEFPQPE
CCCCCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLRISDIPAQDRPRERLLSQGARHLSHAELLAILLNTGQGPGKLSAVGLAQLLLKKLEAQ
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
GDPLAQLRQVEAGELLQIEGIGPAKAATVLAAIELGRRVFLSRPPDRTAIESPEQAAMAL
CCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
SGDLMWESQEHFAVLHLDVKHRLLSQQIVTRGTATETLSHPRETFRSAIKQGASRILVAH
HCCCEECCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHEEEEEE
NHPSGSLDPSPEDLALTRQLLQAGQLLQIPVLDHLILGGGQFLSLRQRTNLWQEFPQPE
CCCCCCCCCCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA