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The map label for this gene is cmpR [H]

Identifier: 86609403

GI number: 86609403

Start: 2040760

End: 2041788

Strand: Direct

Name: cmpR [H]

Synonym: CYB_1948

Alternate gene names: 86609403

Gene position: 2040760-2041788 (Clockwise)

Preceding gene: 86609400

Following gene: 86609405

Centisome position: 66.98

GC content: 52.67

Gene sequence:

>1029_bases
ATGAAGGCCATTACCTTGCACCAACTGCAAATCTTCGAGGTTGCCGCTCGTCACTTGAGCTTTACCCGCGCTGCCGAAGA
GCTCTACCTGACCCAGCCCACGATTTCCATGCAGATCAAGCAATTGAGCAAAGCTGTAGGGTTGCCGCTGTTTGAACAGG
TGGGCAAGCGGCTGTATCTCACCGAAGCGGGGCAAGCTTTACACCAAACCTGCGAGAAGATTTTTGAACAATTGAATCAA
TTTGAGATGACCCTTGCCGACCTGAAGGGGTTAAAGCAGGGACGGCTGAGCATTGGAGTGGTCACCACTGCCAAATACTT
TATTCCCCGTCTTCTGGGGCCATTTTGTCAGCAGTATCCCGGCATTGACGTAGCTCTTAAGGTGCTCAACCGCCAGCAGG
TTTTGGAGCGGATGAGCAACAACATGGACGATCTCTACGTGATGGGGATGCCGCCAGAAGATCTGGACGTGGTGGCACAA
CCTTTTCTGGAAAATCCTTTGGTGGTGATGGCCTCTATTCATCATCCCCTGGTGGGCCAAAAGGGGATCCCTCTGGCGCG
CATTGCCCAAGAACCTTTTTTAGCCCGTGAACCCGGCTCCGGCACCCGCATGGCTGTAGAGCGGCTCTTCGACAAGCATA
ACCTGAAACTCAACATCCGCATGGAGATAGGCAGCAGCGAAGCCATTCGCCAGGGCATTGTGGGTGGATTGGGCATTTCG
GTTTTGTCTCAGCATGTGTTGGCCTTGGGGGGGTGGCAGCATCATCTGGCTATTTTGGATGTGGAAGAGTTTCCCATTCG
GGGGTTCTGGCATTTGGTCTATTTGCGCTCTAAACGTCTTTCGGTGGTGGCCAAAGCTTTTGCCGACTTTCTTCTTTCCC
AGGTTTCTCAAATGGAGCTGGACTTTGTGGCTAAAGAGCAGCACAAATCCAATTCAAGTCCCAATCCTGAACTGTTTTCT
GGCAAAGAGGCTGAAGCACAGCCGAGAGCTCTTGTCGCAACCCCCGGATCCCCTCAAAGTCGTGAGTGA

Upstream 100 bases:

>100_bases
GCCACTGTGACCGTTAGCCAGGTTCTCCTAGGGATCTCGCCAAAAGGCATAGATTAGCGCTTATGATTTAGTAGTAAACC
TTTAGCTTTTCTTGATGTCC

Downstream 100 bases:

>100_bases
ACAATACTCGCAAAAACCCCAGGTAAGCCCGCGCCCACTCGTCTTCCGGATCCAGCTCGACGATCTGTTGAAAATGCAAC
TGAGCTGCTTCTGGTTGTAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MKAITLHQLQIFEVAARHLSFTRAAEELYLTQPTISMQIKQLSKAVGLPLFEQVGKRLYLTEAGQALHQTCEKIFEQLNQ
FEMTLADLKGLKQGRLSIGVVTTAKYFIPRLLGPFCQQYPGIDVALKVLNRQQVLERMSNNMDDLYVMGMPPEDLDVVAQ
PFLENPLVVMASIHHPLVGQKGIPLARIAQEPFLAREPGSGTRMAVERLFDKHNLKLNIRMEIGSSEAIRQGIVGGLGIS
VLSQHVLALGGWQHHLAILDVEEFPIRGFWHLVYLRSKRLSVVAKAFADFLLSQVSQMELDFVAKEQHKSNSSPNPELFS
GKEAEAQPRALVATPGSPQSRE

Sequences:

>Translated_342_residues
MKAITLHQLQIFEVAARHLSFTRAAEELYLTQPTISMQIKQLSKAVGLPLFEQVGKRLYLTEAGQALHQTCEKIFEQLNQ
FEMTLADLKGLKQGRLSIGVVTTAKYFIPRLLGPFCQQYPGIDVALKVLNRQQVLERMSNNMDDLYVMGMPPEDLDVVAQ
PFLENPLVVMASIHHPLVGQKGIPLARIAQEPFLAREPGSGTRMAVERLFDKHNLKLNIRMEIGSSEAIRQGIVGGLGIS
VLSQHVLALGGWQHHLAILDVEEFPIRGFWHLVYLRSKRLSVVAKAFADFLLSQVSQMELDFVAKEQHKSNSSPNPELFS
GKEAEAQPRALVATPGSPQSRE
>Mature_342_residues
MKAITLHQLQIFEVAARHLSFTRAAEELYLTQPTISMQIKQLSKAVGLPLFEQVGKRLYLTEAGQALHQTCEKIFEQLNQ
FEMTLADLKGLKQGRLSIGVVTTAKYFIPRLLGPFCQQYPGIDVALKVLNRQQVLERMSNNMDDLYVMGMPPEDLDVVAQ
PFLENPLVVMASIHHPLVGQKGIPLARIAQEPFLAREPGSGTRMAVERLFDKHNLKLNIRMEIGSSEAIRQGIVGGLGIS
VLSQHVLALGGWQHHLAILDVEEFPIRGFWHLVYLRSKRLSVVAKAFADFLLSQVSQMELDFVAKEQHKSNSSPNPELFS
GKEAEAQPRALVATPGSPQSRE

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.2714776632302, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI157672245, Length=244, Percent_Identity=27.8688524590164, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789173, Length=145, Percent_Identity=38.6206896551724, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=27.6422764227642, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=29.7520661157025, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=27.7551020408163, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=25.7142857142857, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI145693105, Length=238, Percent_Identity=23.5294117647059, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=22.5, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=249, Percent_Identity=25.3012048192771, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=24.5847176079734, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=26.2096774193548, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=233, Percent_Identity=25.7510729613734, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=187, Percent_Identity=25.668449197861, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=134, Percent_Identity=32.089552238806, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=24.5901639344262, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=23.1404958677686, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38177; Mature: 38177

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAITLHQLQIFEVAARHLSFTRAAEELYLTQPTISMQIKQLSKAVGLPLFEQVGKRLYL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCHHHHHHCCEEEE
TEAGQALHQTCEKIFEQLNQFEMTLADLKGLKQGRLSIGVVTTAKYFIPRLLGPFCQQYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCC
GIDVALKVLNRQQVLERMSNNMDDLYVMGMPPEDLDVVAQPFLENPLVVMASIHHPLVGQ
CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC
KGIPLARIAQEPFLAREPGSGTRMAVERLFDKHNLKLNIRMEIGSSEAIRQGIVGGLGIS
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH
VLSQHVLALGGWQHHLAILDVEEFPIRGFWHLVYLRSKRLSVVAKAFADFLLSQVSQMEL
HHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVAKEQHKSNSSPNPELFSGKEAEAQPRALVATPGSPQSRE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure
MKAITLHQLQIFEVAARHLSFTRAAEELYLTQPTISMQIKQLSKAVGLPLFEQVGKRLYL
CCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCHHHHHHCCEEEE
TEAGQALHQTCEKIFEQLNQFEMTLADLKGLKQGRLSIGVVTTAKYFIPRLLGPFCQQYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCC
GIDVALKVLNRQQVLERMSNNMDDLYVMGMPPEDLDVVAQPFLENPLVVMASIHHPLVGQ
CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC
KGIPLARIAQEPFLAREPGSGTRMAVERLFDKHNLKLNIRMEIGSSEAIRQGIVGGLGIS
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHH
VLSQHVLALGGWQHHLAILDVEEFPIRGFWHLVYLRSKRLSVVAKAFADFLLSQVSQMEL
HHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFVAKEQHKSNSSPNPELFSGKEAEAQPRALVATPGSPQSRE
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA