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The map label for this gene is ydcS [H]

Identifier: 86608932

GI number: 86608932

Start: 1539171

End: 1540403

Strand: Direct

Name: ydcS [H]

Synonym: CYB_1464

Alternate gene names: 86608932

Gene position: 1539171-1540403 (Clockwise)

Preceding gene: 86608931

Following gene: 86608933

Centisome position: 50.52

GC content: 58.31

Gene sequence:

>1233_bases
ATGGCCAACCTGAACCCCTTCATTCCCCTACAGGCCAAGAAGCTGGGGTCTATTCTGTTTCGCCTCTGGCTAACTCTTCT
GCTCTTATTGGGCTTGGCCTTGCTCACGTTGCTGCTGACCCCCCATTCCGCTCATGCTGCCCGTGGGCCCCTGTATCGCT
TGGGTCGTCCAGAAGGGGCGGTCTCGATTGTGGCTTGGGCAGGCTATATCGAACGGGGGGAAACGGATCCCGCCTATGAC
TGGGTGACCGGCTTTGAGAAAGAAACCGGCTGCCAAGTCAGCGTTAAGGTGGCGGCAACCTCCGATGAGATGGTAGCCCT
GATGAATGAGGGCGGCTTTGATCTGGTGACGGCCTCCGGCGATGCCACCCTACGCCTGATCAAAGGGGAACGGGTACAGC
AGATTAACCCCCGCCTGATCCCCAGTTGGGAGACCATCGACCCGCGCCTGCGGGATGCTCCCTGGCATACCGTGGATGGC
AAGCATTACGGCGTGCCCTATCAATGGGGATCCAACGTGTTGATGTACAACACAAAGGTTTTCCCGGAACCCCCCACCAG
TTGGGATGTGGTGTTTGAAGAAAAAATCCTGCCAGACGGCAAATCCAACAAGGGCCGCATCCAAGCCTACGATGGCTCCA
TCTACATTGCCGATGCCGCCCTCTACCTGAAGGCCCACCGCCCAGAATTGGGCATCACGGATCCCTACGAGCTGACCCGC
GAACAGTTCAATGCTGCTCTAGCTCTATTGCGACAGCAGCGGCAACTGGTTGGACGCTACTGGCACGATGCGGCGGTGCA
GGTGGATGACTTTGTCAACGAAGGGGTAGTGGCCTCCAGCTCTTGGCCCTTCCAGGTCAATCTGTTGCGATCCGAAGGTC
AACCTGTCGCCAGTGTGATACCGGAAGAGGGAGCCACCGGCTGGGCAGATACAACCATGCTCAGCGCCACTGTCAAACAC
CCCAACTGTGCCTACCTGTGGATGGAACATTCTCTGAACCCGGAGGTGCAGGGGGATCTGGCGGCTTGGTTTGGCTCGGT
GCCGGTGGTGCCCGCCGCTTGTCAGGCCAGCGAGCTGCTGGGGCCAGAGGGATGCAAGACCAATGGCATCGACAATTTTG
AGCGCATCTTCTTCTGGAAAACTCCTGTGGCCGATTGTGGCGATGGACGTATGGATTGCGTGCCCTACTACGAATGGGTG
ACCAACTACATCGCTGTGATTGGCGGGCGCTAA

Upstream 100 bases:

>100_bases
GAATAGAGAGTTGTCGAGATTGTTTTCAATGTAGCGGGATCTCTTCGAGGAATGATCTACCCTTGATGCCAGCGCAGTTG
TTGCCTGGGAGAAGCCTGTG

Downstream 100 bases:

>100_bases
TGGAGCAATCTTAACGAGATCCTAGACTCTTCTTAAAAATTTATTAACTGTAATATGACATAAACACAAAAAATGAATGA
ACCATCTCAATGAATTTGAG

Product: polyamine/opine/phosphonate ABC transporter periplasmic substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MANLNPFIPLQAKKLGSILFRLWLTLLLLLGLALLTLLLTPHSAHAARGPLYRLGRPEGAVSIVAWAGYIERGETDPAYD
WVTGFEKETGCQVSVKVAATSDEMVALMNEGGFDLVTASGDATLRLIKGERVQQINPRLIPSWETIDPRLRDAPWHTVDG
KHYGVPYQWGSNVLMYNTKVFPEPPTSWDVVFEEKILPDGKSNKGRIQAYDGSIYIADAALYLKAHRPELGITDPYELTR
EQFNAALALLRQQRQLVGRYWHDAAVQVDDFVNEGVVASSSWPFQVNLLRSEGQPVASVIPEEGATGWADTTMLSATVKH
PNCAYLWMEHSLNPEVQGDLAAWFGSVPVVPAACQASELLGPEGCKTNGIDNFERIFFWKTPVADCGDGRMDCVPYYEWV
TNYIAVIGGR

Sequences:

>Translated_410_residues
MANLNPFIPLQAKKLGSILFRLWLTLLLLLGLALLTLLLTPHSAHAARGPLYRLGRPEGAVSIVAWAGYIERGETDPAYD
WVTGFEKETGCQVSVKVAATSDEMVALMNEGGFDLVTASGDATLRLIKGERVQQINPRLIPSWETIDPRLRDAPWHTVDG
KHYGVPYQWGSNVLMYNTKVFPEPPTSWDVVFEEKILPDGKSNKGRIQAYDGSIYIADAALYLKAHRPELGITDPYELTR
EQFNAALALLRQQRQLVGRYWHDAAVQVDDFVNEGVVASSSWPFQVNLLRSEGQPVASVIPEEGATGWADTTMLSATVKH
PNCAYLWMEHSLNPEVQGDLAAWFGSVPVVPAACQASELLGPEGCKTNGIDNFERIFFWKTPVADCGDGRMDCVPYYEWV
TNYIAVIGGR
>Mature_409_residues
ANLNPFIPLQAKKLGSILFRLWLTLLLLLGLALLTLLLTPHSAHAARGPLYRLGRPEGAVSIVAWAGYIERGETDPAYDW
VTGFEKETGCQVSVKVAATSDEMVALMNEGGFDLVTASGDATLRLIKGERVQQINPRLIPSWETIDPRLRDAPWHTVDGK
HYGVPYQWGSNVLMYNTKVFPEPPTSWDVVFEEKILPDGKSNKGRIQAYDGSIYIADAALYLKAHRPELGITDPYELTRE
QFNAALALLRQQRQLVGRYWHDAAVQVDDFVNEGVVASSSWPFQVNLLRSEGQPVASVIPEEGATGWADTTMLSATVKHP
NCAYLWMEHSLNPEVQGDLAAWFGSVPVVPAACQASELLGPEGCKTNGIDNFERIFFWKTPVADCGDGRMDCVPYYEWVT
NYIAVIGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=378, Percent_Identity=64.2857142857143, Blast_Score=514, Evalue=1e-147,
Organism=Escherichia coli, GI1787078, Length=298, Percent_Identity=26.510067114094, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787367, Length=291, Percent_Identity=26.4604810996564, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45406; Mature: 45275

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLNPFIPLQAKKLGSILFRLWLTLLLLLGLALLTLLLTPHSAHAARGPLYRLGRPEGA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCEECCCCCCC
VSIVAWAGYIERGETDPAYDWVTGFEKETGCQVSVKVAATSDEMVALMNEGGFDLVTASG
EEEEEEECHHHCCCCCCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
DATLRLIKGERVQQINPRLIPSWETIDPRLRDAPWHTVDGKHYGVPYQWGSNVLMYNTKV
CCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEE
FPEPPTSWDVVFEEKILPDGKSNKGRIQAYDGSIYIADAALYLKAHRPELGITDPYELTR
CCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCHHHHHH
EQFNAALALLRQQRQLVGRYWHDAAVQVDDFVNEGVVASSSWPFQVNLLRSEGQPVASVI
HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCEEECCCCCEEEEEEECCCCCHHHHC
PEEGATGWADTTMLSATVKHPNCAYLWMEHSLNPEVQGDLAAWFGSVPVVPAACQASELL
CCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHCC
GPEGCKTNGIDNFERIFFWKTPVADCGDGRMDCVPYYEWVTNYIAVIGGR
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ANLNPFIPLQAKKLGSILFRLWLTLLLLLGLALLTLLLTPHSAHAARGPLYRLGRPEGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCEECCCCCCC
VSIVAWAGYIERGETDPAYDWVTGFEKETGCQVSVKVAATSDEMVALMNEGGFDLVTASG
EEEEEEECHHHCCCCCCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECC
DATLRLIKGERVQQINPRLIPSWETIDPRLRDAPWHTVDGKHYGVPYQWGSNVLMYNTKV
CCEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEE
FPEPPTSWDVVFEEKILPDGKSNKGRIQAYDGSIYIADAALYLKAHRPELGITDPYELTR
CCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCHHHHHH
EQFNAALALLRQQRQLVGRYWHDAAVQVDDFVNEGVVASSSWPFQVNLLRSEGQPVASVI
HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHCCCEEECCCCCEEEEEEECCCCCHHHHC
PEEGATGWADTTMLSATVKHPNCAYLWMEHSLNPEVQGDLAAWFGSVPVVPAACQASELL
CCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHCC
GPEGCKTNGIDNFERIFFWKTPVADCGDGRMDCVPYYEWVTNYIAVIGGR
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]