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The map label for this gene is ycf4 [H]

Identifier: 86608931

GI number: 86608931

Start: 1538390

End: 1538959

Strand: Direct

Name: ycf4 [H]

Synonym: CYB_1463

Alternate gene names: 86608931

Gene position: 1538390-1538959 (Clockwise)

Preceding gene: 86608930

Following gene: 86608932

Centisome position: 50.49

GC content: 60.53

Gene sequence:

>570_bases
GTGTCCGCCATTGTTCCTGAAATCCGTTCTGCGGATCTGCTGCGCTACACCGTGATTGGGTCGCGGCGGCCCAGCGTGTA
CTTTTGGGCGGTGGCGCTGACGGGGGGAGGGCTGGGCTTTACCTTGGCCGGCCTTTCCAGCTATCTCCACCGCAATTTGC
TCCCCTTTTCCGATCCCGCCAGCCTGGTGTTTATTCCCCAGGGCATTGCCATGCTCTTTTACGGGGTGCTCGGATCCCTG
GCGGGGCTATACCAGTGGCTGAGTTTGTATTGGAACTTGGGAGGCGGCTACAACGAGTTCGACCGGCGCACGCAAAAGAT
AACGCTGGTGCGCCAGGGCTTTCCGGGCAAAAACCGTGAAGTCCGCCTGGAGTATGACTTTGCCGATGTGCAAAGCTTAC
GGGTGGAGCTGAGAGAGGGGCTTAACCCCCGCCGAGCCATCTACTTGCGGGTGAAAGGACGTGGCGACATCCCCCTCACC
GGAGTGGGCCAGCCTCCCCCCCTGACGGAGATCGAAAACCAGGCAGCCGAGATCGCCCGCTTTCTCAACGTCAGCCTAGA
GGGCATTTGA

Upstream 100 bases:

>100_bases
GCCAGTCCCCTGAGCGCCCCTCTGCTGGGGAAAACCCTTGCCGCCCATAGCCTATAGAATGGGGGAAGCCAGCCTTGGAA
AACCTGCAGGGATCCCAACT

Downstream 100 bases:

>100_bases
TTCCCTGCGGTGCCATTGCTTTGACCCCGCCCTGCTGGTCGCTTGAGCGAGACGGAATCCCATCCTTGGGCAACAGTGAA
ACCATTGAGGGGGATCCAGA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSAIVPEIRSADLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPASLVFIPQGIAMLFYGVLGSL
AGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFADVQSLRVELREGLNPRRAIYLRVKGRGDIPLT
GVGQPPPLTEIENQAAEIARFLNVSLEGI

Sequences:

>Translated_189_residues
MSAIVPEIRSADLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPASLVFIPQGIAMLFYGVLGSL
AGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFADVQSLRVELREGLNPRRAIYLRVKGRGDIPLT
GVGQPPPLTEIENQAAEIARFLNVSLEGI
>Mature_188_residues
SAIVPEIRSADLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPASLVFIPQGIAMLFYGVLGSLA
GLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNREVRLEYDFADVQSLRVELREGLNPRRAIYLRVKGRGDIPLTG
VGQPPPLTEIENQAAEIARFLNVSLEGI

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 21019; Mature: 20887

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIVPEIRSADLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPA
CCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
SLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNRE
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCCCCCCE
VRLEYDFADVQSLRVELREGLNPRRAIYLRVKGRGDIPLTGVGQPPPLTEIENQAAEIAR
EEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FLNVSLEGI
HHHHHCCCC
>Mature Secondary Structure 
SAIVPEIRSADLLRYTVIGSRRPSVYFWAVALTGGGLGFTLAGLSSYLHRNLLPFSDPA
CCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCC
SLVFIPQGIAMLFYGVLGSLAGLYQWLSLYWNLGGGYNEFDRRTQKITLVRQGFPGKNRE
CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEECCCCCCCCE
VRLEYDFADVQSLRVELREGLNPRRAIYLRVKGRGDIPLTGVGQPPPLTEIENQAAEIAR
EEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
FLNVSLEGI
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA