| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608819
Identifier: 86608819
GI number: 86608819
Start: 1413155
End: 1414633
Strand: Reverse
Name: 86608819
Synonym: CYB_1345
Alternate gene names: NA
Gene position: 1414633-1413155 (Counterclockwise)
Preceding gene: 86608820
Following gene: 86608818
Centisome position: 46.43
GC content: 62.61
Gene sequence:
>1479_bases GTGAACAGCCGCCGATTTCTGTCCTTGATGGAAGCTTTGTGGGCCGATCTGCCCTTGCCGGAATGGTTGCCGGGGGCAGG AGAGCGCTCCTGGCAGCAGACGGTGGCAGCCCTGCTCCAGCTATGGCAAGAAGTTGGACAGTTTGGGGTGGTGATCGGTG GGCCGGTGTCTTGGTGGCCCCCCTGGGTGGTTCGGGATCCGCTGCCTCAACTGCCGTCGCCCATTGACGCTCCAGAACCG AACCTGAAGCTGCGGGAGCTGGCCCGTGAAGATCCCTGGCTGTTTACCCCTGACTTGTCCCCTGAGTCGATTCTGACCCC TGGCCAGACGGTGATCCCTCTCCTGCCGCAGGATCCCCTGGTGGAGGAGCCTTTTTTGCTGGTGCTCACCCCTGTTTTTT CGGCGGTGGCCGCCCAAGGGCATCACCCCCACACGCGGCAGAGGGGGATGATGGTGTCTTTTGAGCCGGAAGTGGTGCAT CGGGCTTGGCAGATCCTAGAGCAGCGGGTTCAACAGGGTAGGCCGGATCGCTTGCCCTTCTGGCAGGAGCTGATCAAGCA CCATCCCCTCATGGAGCCTCATGTGCGGGTGCTGGCCCGCTTCAGCAGCCTTCTTCTGCTGGGAAACCTGGCCGAGTCGG GATCCCCGCCCGCTCGCTTACCCCCCGCCAGAGCCGAGAACTCCCCTGCGCCCACAACCCGGCCAGAAGATTGGCAGAAG CGGCGGTCTCCTCCTTCCCATGGCCAGCCTGCCGGTCAAGGCCAACAGAACAGCCTTTCGGAGGCAGAACTGTTGCGGGC TCTCATCCACGAGATCCAGACGCCCCTCAGCACCATCCGCACCTTGGTTAGTCTCATCCTGAAGCGGCACGATCTGCCGT CGCGGGTACGGGAATACGTGGAGAAAATTGACCGCGAATGTACCGAGCAAATCAACCGCTTCGGGCTGTTTTTCCAGGCT ACAGAAACGGTGATGCCCGCTGCTACCCCACAGGAGGGGCGTCGGCTTCAGCTAGAGCCCATTGCGCTGGTGGACTTGGT GCGGCAAAACCTGCCTCGCTGGCAGGAGCAGGTGGAACGGCGGGGATCCCAACTGGAGTTGGAGATTCCCGATGAGCTGC CGGATGTGGTCAGCGATCCCAAGGCGCTGGAAGCGGTGCTGTTTGGCATGGTCGACCGCATTGCCCGCAGCACGCCGGCT GGCAGCCACATTCGCGCCCAGTTGGTCAGCGCAGGGGAGCTGGTCAAACTTCAGTTTCAGGTCAACACACCTGAGGGCAG CGACGCCACTGTTGCCTCAGAGCCCAAATCCCCTCAGGCGATTGGGCAGTTGTTGGTCGTGCAGCCGGATACCGGTGCAG TGAGCCTCAGCCTTCCCGTCACCCAAACTCTGTTCCGCGCCTTGGGGGGCTACCTCACCGTGCGCCATCGCGCCCGTCGG GGGGAAATTCTCAACATCTACCTGCCCCGCCAGCTATAA
Upstream 100 bases:
>100_bases GAGTGAGACGGGGATCCGCCCCGGAAAAGGTGAGGTTTTCCCCTGCCCCAGAGGGGCCACAACCGCTACCCTACAAGGGA AGGATGGGTCAAAGAGATCC
Downstream 100 bases:
>100_bases GCCACCCAGTTGGGATCCCGATAGCGTCTCAGGATTGATATGGCGGATTGCAGGGGAGGTAGGGCTAGGATCGATCTGCC AGCGCCGGGAGAGTCTAGGG
Product: sensor histidine kinase
Products: NA
Alternate protein names: Two-Component Sensor Histidine Kinase; Sensor Histidine Kinase; Signal Transduction Histidine Kinase; Histidine Kinase A Domain Protein; Two Component System Sensor Histidine Kinase; Sensory Transduction Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MNSRRFLSLMEALWADLPLPEWLPGAGERSWQQTVAALLQLWQEVGQFGVVIGGPVSWWPPWVVRDPLPQLPSPIDAPEP NLKLRELAREDPWLFTPDLSPESILTPGQTVIPLLPQDPLVEEPFLLVLTPVFSAVAAQGHHPHTRQRGMMVSFEPEVVH RAWQILEQRVQQGRPDRLPFWQELIKHHPLMEPHVRVLARFSSLLLLGNLAESGSPPARLPPARAENSPAPTTRPEDWQK RRSPPSHGQPAGQGQQNSLSEAELLRALIHEIQTPLSTIRTLVSLILKRHDLPSRVREYVEKIDRECTEQINRFGLFFQA TETVMPAATPQEGRRLQLEPIALVDLVRQNLPRWQEQVERRGSQLELEIPDELPDVVSDPKALEAVLFGMVDRIARSTPA GSHIRAQLVSAGELVKLQFQVNTPEGSDATVASEPKSPQAIGQLLVVQPDTGAVSLSLPVTQTLFRALGGYLTVRHRARR GEILNIYLPRQL
Sequences:
>Translated_492_residues MNSRRFLSLMEALWADLPLPEWLPGAGERSWQQTVAALLQLWQEVGQFGVVIGGPVSWWPPWVVRDPLPQLPSPIDAPEP NLKLRELAREDPWLFTPDLSPESILTPGQTVIPLLPQDPLVEEPFLLVLTPVFSAVAAQGHHPHTRQRGMMVSFEPEVVH RAWQILEQRVQQGRPDRLPFWQELIKHHPLMEPHVRVLARFSSLLLLGNLAESGSPPARLPPARAENSPAPTTRPEDWQK RRSPPSHGQPAGQGQQNSLSEAELLRALIHEIQTPLSTIRTLVSLILKRHDLPSRVREYVEKIDRECTEQINRFGLFFQA TETVMPAATPQEGRRLQLEPIALVDLVRQNLPRWQEQVERRGSQLELEIPDELPDVVSDPKALEAVLFGMVDRIARSTPA GSHIRAQLVSAGELVKLQFQVNTPEGSDATVASEPKSPQAIGQLLVVQPDTGAVSLSLPVTQTLFRALGGYLTVRHRARR GEILNIYLPRQL >Mature_492_residues MNSRRFLSLMEALWADLPLPEWLPGAGERSWQQTVAALLQLWQEVGQFGVVIGGPVSWWPPWVVRDPLPQLPSPIDAPEP NLKLRELAREDPWLFTPDLSPESILTPGQTVIPLLPQDPLVEEPFLLVLTPVFSAVAAQGHHPHTRQRGMMVSFEPEVVH RAWQILEQRVQQGRPDRLPFWQELIKHHPLMEPHVRVLARFSSLLLLGNLAESGSPPARLPPARAENSPAPTTRPEDWQK RRSPPSHGQPAGQGQQNSLSEAELLRALIHEIQTPLSTIRTLVSLILKRHDLPSRVREYVEKIDRECTEQINRFGLFFQA TETVMPAATPQEGRRLQLEPIALVDLVRQNLPRWQEQVERRGSQLELEIPDELPDVVSDPKALEAVLFGMVDRIARSTPA GSHIRAQLVSAGELVKLQFQVNTPEGSDATVASEPKSPQAIGQLLVVQPDTGAVSLSLPVTQTLFRALGGYLTVRHRARR GEILNIYLPRQL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55199; Mature: 55199
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSRRFLSLMEALWADLPLPEWLPGAGERSWQQTVAALLQLWQEVGQFGVVIGGPVSWWP CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC PWVVRDPLPQLPSPIDAPEPNLKLRELAREDPWLFTPDLSPESILTPGQTVIPLLPQDPL CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCCCC VEEPFLLVLTPVFSAVAAQGHHPHTRQRGMMVSFEPEVVHRAWQILEQRVQQGRPDRLPF CCCCHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCH WQELIKHHPLMEPHVRVLARFSSLLLLGNLAESGSPPARLPPARAENSPAPTTRPEDWQK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH RRSPPSHGQPAGQGQQNSLSEAELLRALIHEIQTPLSTIRTLVSLILKRHDLPSRVREYV HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHH EKIDRECTEQINRFGLFFQATETVMPAATPQEGRRLQLEPIALVDLVRQNLPRWQEQVER HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCHHHHHHHHH RGSQLELEIPDELPDVVSDPKALEAVLFGMVDRIARSTPAGSHIRAQLVSAGELVKLQFQ CCCEEEEECCHHCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEE VNTPEGSDATVASEPKSPQAIGQLLVVQPDTGAVSLSLPVTQTLFRALGGYLTVRHRARR EECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC GEILNIYLPRQL CCEEEEECCCCC >Mature Secondary Structure MNSRRFLSLMEALWADLPLPEWLPGAGERSWQQTVAALLQLWQEVGQFGVVIGGPVSWWP CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC PWVVRDPLPQLPSPIDAPEPNLKLRELAREDPWLFTPDLSPESILTPGQTVIPLLPQDPL CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCCCC VEEPFLLVLTPVFSAVAAQGHHPHTRQRGMMVSFEPEVVHRAWQILEQRVQQGRPDRLPF CCCCHHHHHHHHHHHHHHCCCCCCHHHCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCH WQELIKHHPLMEPHVRVLARFSSLLLLGNLAESGSPPARLPPARAENSPAPTTRPEDWQK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH RRSPPSHGQPAGQGQQNSLSEAELLRALIHEIQTPLSTIRTLVSLILKRHDLPSRVREYV HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHH EKIDRECTEQINRFGLFFQATETVMPAATPQEGRRLQLEPIALVDLVRQNLPRWQEQVER HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHCHHHHHHHHH RGSQLELEIPDELPDVVSDPKALEAVLFGMVDRIARSTPAGSHIRAQLVSAGELVKLQFQ CCCEEEEECCHHCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEE VNTPEGSDATVASEPKSPQAIGQLLVVQPDTGAVSLSLPVTQTLFRALGGYLTVRHRARR EECCCCCCCCCCCCCCCHHHHCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCC GEILNIYLPRQL CCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA