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The map label for this gene is yjcF [C]

Identifier: 86608820

GI number: 86608820

Start: 1414778

End: 1415764

Strand: Reverse

Name: yjcF [C]

Synonym: CYB_1346

Alternate gene names: 86608820

Gene position: 1415764-1414778 (Counterclockwise)

Preceding gene: 86608821

Following gene: 86608819

Centisome position: 46.47

GC content: 61.2

Gene sequence:

>987_bases
ATGGACGCCAAGGATCTGCTCCGGCTTTACCGGGCAGGACGAACCAACTTTGCGGGCGAAAACCTGGCCGCCCTTGACCT
GAGCCGGGCCGATTTGATCGGGGTGGATCTCTCCCAAGCAAACCTGCACAGTGCCAATTTGATCTTCGCCTTCTTGGGGC
GAGCCAAGCTGCAGAAGGCCAACCTCGTCGGGGCTAACCTTGGTGGGGCCAACCTCAGCCAGGCGGACTTGAGCGAGGCG
GATCTCAGAGATGCCCAGTTGCACGGCGCCACCCTACAAGGAGCAGATTTGCATGGGGCCAACCTGACGCTGGCTCTGTT
GATCGATGCCAACCTGCTGGATGCGGATTTGCGTTGGGCCAACCTCACCAGTGCCAACTTGGGGGGAGCTTGCTTGCGGG
GGGCTAATCTCCGTTTCGATAGCCGCCGGGGAGCGGTATTGCGCAACGCCAATCTTAGCCGCGCTGATCTCAGCGGAGCC
AACCTGTCGGGAGCGGATTTGACACGGGCCGACCTGAGCGGGGCCAACCTAAAAGAGGCCAGTTTGATCAAAGCCAACTT
GCAAGGGGCCAATCTGCAGCAAGCCCGTTTGCAAGGGGCCATCCTGAGCGAGACCGACCTGAGGGGGGTTTCTTTTTTGG
GGGCAGACCTGCAAGGGGCGCAGATGGCGCGGGCCAACTTGAAGGAGGCGATACTTCGCCAGGTGAATTTGACAGAGGCC
AACTTAAGCGAGGCGGATCTGGCCGGGGCCGATCTTTCCGCGAGTTCTTTGTGCTCGGCCAAACTGGCGCGGACGGATCT
CAGTCGGGCCAATCTGGCCGGGGCCGATTTGCGGTGTGCCAACCTGGTGGATGCCTATTTGGGCCGCACCAACCTGGAAA
ATGCCGATCTCGGCGAGGCAATCCTAACCCGAGCCGATCTGAGCACAGCCAACCTCAGCGGGGCCAATTTGCGCGGGGCA
ACTCTGCCGGATGGACGGGTAGGCTGA

Upstream 100 bases:

>100_bases
ATCAGCCGCGCCGAGTGTTGGGGAAACGCCTTGATTTTCTTCTAGAATGGCCGCTAGTTTGGATCCCCTCTCGCTTTTCT
GAGCTCTCCCCCCTCCATCT

Downstream 100 bases:

>100_bases
TTGGACAGACTCGCTACCGTATGAGGACGAGGATTCTTGTCCCTGAGTGAGACGGGGATCCGCCCCGGAAAAGGTGAGGT
TTTCCCCTGCCCCAGAGGGG

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MDAKDLLRLYRAGRTNFAGENLAALDLSRADLIGVDLSQANLHSANLIFAFLGRAKLQKANLVGANLGGANLSQADLSEA
DLRDAQLHGATLQGADLHGANLTLALLIDANLLDADLRWANLTSANLGGACLRGANLRFDSRRGAVLRNANLSRADLSGA
NLSGADLTRADLSGANLKEASLIKANLQGANLQQARLQGAILSETDLRGVSFLGADLQGAQMARANLKEAILRQVNLTEA
NLSEADLAGADLSASSLCSAKLARTDLSRANLAGADLRCANLVDAYLGRTNLENADLGEAILTRADLSTANLSGANLRGA
TLPDGRVG

Sequences:

>Translated_328_residues
MDAKDLLRLYRAGRTNFAGENLAALDLSRADLIGVDLSQANLHSANLIFAFLGRAKLQKANLVGANLGGANLSQADLSEA
DLRDAQLHGATLQGADLHGANLTLALLIDANLLDADLRWANLTSANLGGACLRGANLRFDSRRGAVLRNANLSRADLSGA
NLSGADLTRADLSGANLKEASLIKANLQGANLQQARLQGAILSETDLRGVSFLGADLQGAQMARANLKEAILRQVNLTEA
NLSEADLAGADLSASSLCSAKLARTDLSRANLAGADLRCANLVDAYLGRTNLENADLGEAILTRADLSTANLSGANLRGA
TLPDGRVG
>Mature_328_residues
MDAKDLLRLYRAGRTNFAGENLAALDLSRADLIGVDLSQANLHSANLIFAFLGRAKLQKANLVGANLGGANLSQADLSEA
DLRDAQLHGATLQGADLHGANLTLALLIDANLLDADLRWANLTSANLGGACLRGANLRFDSRRGAVLRNANLSRADLSGA
NLSGADLTRADLSGANLKEASLIKANLQGANLQQARLQGAILSETDLRGVSFLGADLQGAQMARANLKEAILRQVNLTEA
NLSEADLAGADLSASSLCSAKLARTDLSRANLAGADLRCANLVDAYLGRTNLENADLGEAILTRADLSTANLSGANLRGA
TLPDGRVG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=195, Percent_Identity=35.8974358974359, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI1790502, Length=192, Percent_Identity=27.6041666666667, Blast_Score=70, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221377802, Length=178, Percent_Identity=37.0786516853933, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 34053; Mature: 34053

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKDLLRLYRAGRTNFAGENLAALDLSRADLIGVDLSQANLHSANLIFAFLGRAKLQKA
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
NLVGANLGGANLSQADLSEADLRDAQLHGATLQGADLHGANLTLALLIDANLLDADLRWA
HEEECCCCCCCCCHHCCCHHHCCHHHHCCCEECCCCCCCCCEEEEEEEECCEECCCCEEE
NLTSANLGGACLRGANLRFDSRRGAVLRNANLSRADLSGANLSGADLTRADLSGANLKEA
ECCCCCCCCHHEECCCCEECCCCCCEEECCCCCHHCCCCCCCCCCCCCHHCCCCCCCCHH
SLIKANLQGANLQQARLQGAILSETDLRGVSFLGADLQGAQMARANLKEAILRQVNLTEA
HEEEECCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
NLSEADLAGADLSASSLCSAKLARTDLSRANLAGADLRCANLVDAYLGRTNLENADLGEA
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
ILTRADLSTANLSGANLRGATLPDGRVG
HHHHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDAKDLLRLYRAGRTNFAGENLAALDLSRADLIGVDLSQANLHSANLIFAFLGRAKLQKA
CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
NLVGANLGGANLSQADLSEADLRDAQLHGATLQGADLHGANLTLALLIDANLLDADLRWA
HEEECCCCCCCCCHHCCCHHHCCHHHHCCCEECCCCCCCCCEEEEEEEECCEECCCCEEE
NLTSANLGGACLRGANLRFDSRRGAVLRNANLSRADLSGANLSGADLTRADLSGANLKEA
ECCCCCCCCHHEECCCCEECCCCCCEEECCCCCHHCCCCCCCCCCCCCHHCCCCCCCCHH
SLIKANLQGANLQQARLQGAILSETDLRGVSFLGADLQGAQMARANLKEAILRQVNLTEA
HEEEECCCCCCHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
NLSEADLAGADLSASSLCSAKLARTDLSRANLAGADLRCANLVDAYLGRTNLENADLGEA
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
ILTRADLSTANLSGANLRGATLPDGRVG
HHHHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]