| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608719
Identifier: 86608719
GI number: 86608719
Start: 1291789
End: 1292412
Strand: Reverse
Name: 86608719
Synonym: CYB_1243
Alternate gene names: NA
Gene position: 1292412-1291789 (Counterclockwise)
Preceding gene: 86608720
Following gene: 86608718
Centisome position: 42.42
GC content: 62.18
Gene sequence:
>624_bases ATGGGATGGGCACGGCTCCAACCTGTAAAGCCCTTGATGAGGGGAAGTCGCCTCTGGTCGGGAGCGCTGTTGGCGCTGGG GATCCCGACGGCTGCGGCCTTTGCCCAACTGGAGTTGGATGCCCAACTGGGCCGCTCCCAAATTGTTTTTCCCAGCAAAG ATTGCCCCGCCTGCAACCTAACGGGGGCAGAACTGCCGGGAGCTGACCTCAGTGGGGCCAACCTGAAAGAAGCGATCCTC AGACAGGCCAATCTCCAAGCTGCCGACCTCTCCCAAGCAATCCTCAATCTGGCCGATTTGAGAGGGGCCAATCTGAGTGG CTCAGCTCAGGCAGGGGCTTTCTTGTGGGAAGCCGATCTGGCGCAGGCCAACCTGCAGCAGACAGATCTGACGGGTGCCA ATCTGCAGGTGGCCAACTTAAGCGGGGCCGACTTGCGTCGAGCCATCCTCACCCGCGCCGACCTCACAGGGGCCAAGTTA CACAATGCCGATCTGCGGGGGGCCGACCTGCGAGGCGCTTTTCTGGAGGGGGCGGATCTGACCGGCGCCCTGTACAATGC CCAAACCCGGCTGGATCCCACCTTTGACCCCCAGGCCCGCGGCATGGTCTTGGTGAAGCCATAA
Upstream 100 bases:
>100_bases CGCAACAGAGCTAGTGGCGCTCCTCAAGATATGGGGGATCCCTGGGGAAATGGGCCAGAGCGGCTACCATCAGCAGTAGG AGGGGATCCCGGTGAAAACC
Downstream 100 bases:
>100_bases CCCCCCTCTCCCCAAGGGAGAGGGGCTGGGGGTGAGGGCGCTTTATTTGGGATCCCCCCTTGGGCAGATTAAAACCAGCA CCCCCTCGGCTGGGATCCCC
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MGWARLQPVKPLMRGSRLWSGALLALGIPTAAAFAQLELDAQLGRSQIVFPSKDCPACNLTGAELPGADLSGANLKEAIL RQANLQAADLSQAILNLADLRGANLSGSAQAGAFLWEADLAQANLQQTDLTGANLQVANLSGADLRRAILTRADLTGAKL HNADLRGADLRGAFLEGADLTGALYNAQTRLDPTFDPQARGMVLVKP
Sequences:
>Translated_207_residues MGWARLQPVKPLMRGSRLWSGALLALGIPTAAAFAQLELDAQLGRSQIVFPSKDCPACNLTGAELPGADLSGANLKEAIL RQANLQAADLSQAILNLADLRGANLSGSAQAGAFLWEADLAQANLQQTDLTGANLQVANLSGADLRRAILTRADLTGAKL HNADLRGADLRGAFLEGADLTGALYNAQTRLDPTFDPQARGMVLVKP >Mature_206_residues GWARLQPVKPLMRGSRLWSGALLALGIPTAAAFAQLELDAQLGRSQIVFPSKDCPACNLTGAELPGADLSGANLKEAILR QANLQAADLSQAILNLADLRGANLSGSAQAGAFLWEADLAQANLQQTDLTGANLQVANLSGADLRRAILTRADLTGAKLH NADLRGADLRGAFLEGADLTGALYNAQTRLDPTFDPQARGMVLVKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 pentapeptide repeat domains [H]
Homologues:
Organism=Homo sapiens, GI39753959, Length=156, Percent_Identity=37.1794871794872, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI221377802, Length=138, Percent_Identity=36.9565217391304, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001646 [H]
Pfam domain/function: PF00805 Pentapeptide [H]
EC number: NA
Molecular weight: Translated: 21677; Mature: 21546
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWARLQPVKPLMRGSRLWSGALLALGIPTAAAFAQLELDAQLGRSQIVFPSKDCPACNL CCCCCCCCCHHHHHCCHHCCCEEEEECCCHHHHHHHEEEHHHCCCCEEEECCCCCCCCCC TGAELPGADLSGANLKEAILRQANLQAADLSQAILNLADLRGANLSGSAQAGAFLWEADL CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHH AQANLQQTDLTGANLQVANLSGADLRRAILTRADLTGAKLHNADLRGADLRGAFLEGADL HHCCCHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCC TGALYNAQTRLDPTFDPQARGMVLVKP CHHEECCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure GWARLQPVKPLMRGSRLWSGALLALGIPTAAAFAQLELDAQLGRSQIVFPSKDCPACNL CCCCCCCCHHHHHCCHHCCCEEEEECCCHHHHHHHEEEHHHCCCCEEEECCCCCCCCCC TGAELPGADLSGANLKEAILRQANLQAADLSQAILNLADLRGANLSGSAQAGAFLWEADL CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHH AQANLQQTDLTGANLQVANLSGADLRRAILTRADLTGAKLHNADLRGADLRGAFLEGADL HHCCCHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCC TGALYNAQTRLDPTFDPQARGMVLVKP CHHEECCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA