| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is ydaM [H]
Identifier: 86608172
GI number: 86608172
Start: 700561
End: 702855
Strand: Reverse
Name: ydaM [H]
Synonym: CYB_0686
Alternate gene names: 86608172
Gene position: 702855-700561 (Counterclockwise)
Preceding gene: 86608173
Following gene: 86608169
Centisome position: 23.07
GC content: 56.91
Gene sequence:
>2295_bases ATGCTCCAGTCCCTCAAATCCTCGCTTTTGCGCACGGGCTACCTTACCCGGCAGCAATTGGCTGAGGCTGAGGAGTATCG CGAAGCAGCTAGTTGCTCCTTGCCTAGGGCTCTTTGGAGCTTGCGAGTCATGCACCCGGGCAAGTTTGTCAACTTGTGTC GCCAGATTCTGGACCGGCCTAGGCTGAGAGACTGGCTGCTCAAGCACTCCCTAGATCCAGAGCTGCCTTGGCTGATTGAG CCTATTGATTTGGTGCCGGTGCGCTTTTTGCCCTGTGGCTGGCTCGACCCGCAAACTGTTGTGGTGGCCACAGAAGAGCC GGGCTTCCCCGCCATTTGGCAGTCTGTGAAACACCTGTGCCCGGAAGCAGAAAAACTCTGGGAGATCCCAGCCACTGAAA AGCAGATCCTGACGGTCATCCTTGAGCGCAAGCTGGCCGCCGAGCTGCTGGGCAGCCGTCTTACCTTAGAGCAGTGGCAG CAGGCTTTGGAGATCCGCCGCCGCACCGGCTCCAGCCTGGGGCAGGTGCTGACCCGGCTGAGCTACCTCTCCACCCCCGA GTATCTCAGCATCCTAGCCCATTTGCTGGGCTACCCCGCTGTCTCAGAACTAATGGGGACAGGGCTGCTCCACCGCGACG AGAGCCTGAGCCGGCAGTTTGATCCCGAGGTGATGATGCGCCACCTCTTCTACCCCTTGAGCTGGACGGATGAGCACACC CTTACAGTGATGGTCAATGACCCCCTGGACTGGGTGGTGGATGAGCTGCTCTACAGCTGGCGGCCAGGCTTGCGGATTGA AAAGGTGCTGGGCACCGAGCAGGATATCACGCAACTGCTCAGCCAAGACCAGGGATCCCGCTTCAGCCAAGAGGCGGTGT ACAAGCTGATGGCCCGCCTGCCGGAGGAATCGGCCTCGCGGGTGTTTACTCCTTCTCAGATTGCAGTGGGCTACGGCCTG CTGCTGCTATTTCTATTGGGGTTGGCCACTGCTCCCTGGACGACTCTGACCATTTTGGTGCTGCTGATCAATCTTTTTTA CGTCGCTTCGATCCTGTTCAAACTGCTGCTCAGCCTAGTGGGATCCGCCGATCGCTTCCACCAGATTACCGATGAGGAAG TAGCCGCTTTGGATGATCGCGACTTGCCTATCTACACCATCCTGGTGCCGGTCTACAAAGAGCCGGAAGTAATGCCGATT TTGATCAAGTCTCTCTCTAAGCTGGATTACCCCCACGAGCGGTTGGATGTGCTTATTCTGTTGGAGGAAAACGACCGAGA CACCATTGAGGCAGCTCGAGCTGCCAAGCCCCCCCGCTACGTGCGCCTGCTGTTGGTGCCCGACAGCAAACCCAAGACCA AACCCAAAGCCTGCAACTACGGCCTGGCCTTTGCCCGTGGCGAATATCTCACCATCTACGACGCTGAAGACATTCCGGAT CCAGACCAACTCAAAAAAGCAGTCATTGCCTTCCGAAAAGGGGATCCCAGCTTGGTCTGCGTCCAGGCTGCCCTCAACTA CTTCAACCGCAGCGAGAACTTCCTCACCCGCATGTTCACCCTGGAGTATTCCTATTGGTTTGATTACCTTCTGCCGGGTT TGGAAACTCTCAGAATGCCGATCCCCTTGGGTGGCACCAGCAACCACTTTCGCACTGACCGCCTGCGGGAGCTGCAGGGA TGGGATCCGTTCAACGTCACTGAAGACGCCGACTTGGGCATCCGCGCCAGCCAGCACGGCTATACGGTGGGGGTGATCAA CTCCACCACTTATGAAGAGGCCAACTGTGCCGTTAAAAACTGGATCCGGCAGCGCTCCCGCTGGATCAAAGGCTACATGC AAACTTGGCTGGTCCACAACCGCAACCCCCTGCGCTCCTTGCGCAAGCTGGGCCTCAAAAACTGGCTATCCTACCAATTT TTTATCGGGGGCAGCTTCTTTACCTTTCTCACCAGCCCCATCATGTGGCTGCTGTTTATTTACTGGCTGCTCACCCGCGC CCATTGGCTGCAAAACCTATTTCCCAGTTGGCTGGTTTATCTGGGCTTGTTTAACCTCCTGGTGGGCAACGCCATTGGGA TTTACCTGAACCTGGTCGCGGTCTTCCGCCGCGGTTACTACGATCTGGCTTTCTATGCTCTGCTCAACCCCATCTACTGG CAACTGCACTCTATGGCAGCTTACATGGCCCTGTGGCAGCTTTTCACCAAGCCCTTCTACTGGGAAAAGACCATCCACGG GCTGAGCAAGTTTACCCATGCCAAAGTCCAGGAAGCTGCTCATAAAGCAGCCTAG
Upstream 100 bases:
>100_bases GCCCACCCTTTCCTAGGGGGGTTGGCAGAGGACTTCCGGTTAAACCAGACTTGAGCCAAGCAAGGACTCCGTCCCACTTG CGCGAATAGGGTTTCCAGCC
Downstream 100 bases:
>100_bases GCTACTGAATCGGTTTCCCAAGCAGTGGTGACGAAGTGAGGACAGCCAGCACCCTTCTAGAAGCTGTAGTCCGAGTCTAC GATCACAGCACAACCACTGG
Product: glycosyl transferase, group 2 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 764
Protein sequence:
>764_residues MLQSLKSSLLRTGYLTRQQLAEAEEYREAASCSLPRALWSLRVMHPGKFVNLCRQILDRPRLRDWLLKHSLDPELPWLIE PIDLVPVRFLPCGWLDPQTVVVATEEPGFPAIWQSVKHLCPEAEKLWEIPATEKQILTVILERKLAAELLGSRLTLEQWQ QALEIRRRTGSSLGQVLTRLSYLSTPEYLSILAHLLGYPAVSELMGTGLLHRDESLSRQFDPEVMMRHLFYPLSWTDEHT LTVMVNDPLDWVVDELLYSWRPGLRIEKVLGTEQDITQLLSQDQGSRFSQEAVYKLMARLPEESASRVFTPSQIAVGYGL LLLFLLGLATAPWTTLTILVLLINLFYVASILFKLLLSLVGSADRFHQITDEEVAALDDRDLPIYTILVPVYKEPEVMPI LIKSLSKLDYPHERLDVLILLEENDRDTIEAARAAKPPRYVRLLLVPDSKPKTKPKACNYGLAFARGEYLTIYDAEDIPD PDQLKKAVIAFRKGDPSLVCVQAALNYFNRSENFLTRMFTLEYSYWFDYLLPGLETLRMPIPLGGTSNHFRTDRLRELQG WDPFNVTEDADLGIRASQHGYTVGVINSTTYEEANCAVKNWIRQRSRWIKGYMQTWLVHNRNPLRSLRKLGLKNWLSYQF FIGGSFFTFLTSPIMWLLFIYWLLTRAHWLQNLFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFYALLNPIYW QLHSMAAYMALWQLFTKPFYWEKTIHGLSKFTHAKVQEAAHKAA
Sequences:
>Translated_764_residues MLQSLKSSLLRTGYLTRQQLAEAEEYREAASCSLPRALWSLRVMHPGKFVNLCRQILDRPRLRDWLLKHSLDPELPWLIE PIDLVPVRFLPCGWLDPQTVVVATEEPGFPAIWQSVKHLCPEAEKLWEIPATEKQILTVILERKLAAELLGSRLTLEQWQ QALEIRRRTGSSLGQVLTRLSYLSTPEYLSILAHLLGYPAVSELMGTGLLHRDESLSRQFDPEVMMRHLFYPLSWTDEHT LTVMVNDPLDWVVDELLYSWRPGLRIEKVLGTEQDITQLLSQDQGSRFSQEAVYKLMARLPEESASRVFTPSQIAVGYGL LLLFLLGLATAPWTTLTILVLLINLFYVASILFKLLLSLVGSADRFHQITDEEVAALDDRDLPIYTILVPVYKEPEVMPI LIKSLSKLDYPHERLDVLILLEENDRDTIEAARAAKPPRYVRLLLVPDSKPKTKPKACNYGLAFARGEYLTIYDAEDIPD PDQLKKAVIAFRKGDPSLVCVQAALNYFNRSENFLTRMFTLEYSYWFDYLLPGLETLRMPIPLGGTSNHFRTDRLRELQG WDPFNVTEDADLGIRASQHGYTVGVINSTTYEEANCAVKNWIRQRSRWIKGYMQTWLVHNRNPLRSLRKLGLKNWLSYQF FIGGSFFTFLTSPIMWLLFIYWLLTRAHWLQNLFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFYALLNPIYW QLHSMAAYMALWQLFTKPFYWEKTIHGLSKFTHAKVQEAAHKAA >Mature_764_residues MLQSLKSSLLRTGYLTRQQLAEAEEYREAASCSLPRALWSLRVMHPGKFVNLCRQILDRPRLRDWLLKHSLDPELPWLIE PIDLVPVRFLPCGWLDPQTVVVATEEPGFPAIWQSVKHLCPEAEKLWEIPATEKQILTVILERKLAAELLGSRLTLEQWQ QALEIRRRTGSSLGQVLTRLSYLSTPEYLSILAHLLGYPAVSELMGTGLLHRDESLSRQFDPEVMMRHLFYPLSWTDEHT LTVMVNDPLDWVVDELLYSWRPGLRIEKVLGTEQDITQLLSQDQGSRFSQEAVYKLMARLPEESASRVFTPSQIAVGYGL LLLFLLGLATAPWTTLTILVLLINLFYVASILFKLLLSLVGSADRFHQITDEEVAALDDRDLPIYTILVPVYKEPEVMPI LIKSLSKLDYPHERLDVLILLEENDRDTIEAARAAKPPRYVRLLLVPDSKPKTKPKACNYGLAFARGEYLTIYDAEDIPD PDQLKKAVIAFRKGDPSLVCVQAALNYFNRSENFLTRMFTLEYSYWFDYLLPGLETLRMPIPLGGTSNHFRTDRLRELQG WDPFNVTEDADLGIRASQHGYTVGVINSTTYEEANCAVKNWIRQRSRWIKGYMQTWLVHNRNPLRSLRKLGLKNWLSYQF FIGGSFFTFLTSPIMWLLFIYWLLTRAHWLQNLFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFYALLNPIYW QLHSMAAYMALWQLFTKPFYWEKTIHGLSKFTHAKVQEAAHKAA
Specific function: Unknown
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 88194; Mature: 88194
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQSLKSSLLRTGYLTRQQLAEAEEYREAASCSLPRALWSLRVMHPGKFVNLCRQILDRP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCC RLRDWLLKHSLDPELPWLIEPIDLVPVRFLPCGWLDPQTVVVATEEPGFPAIWQSVKHLC HHHHHHHHHCCCCCCCCEECCHHHCCHHEECCCCCCCCEEEEEECCCCCHHHHHHHHHHC PEAEKLWEIPATEKQILTVILERKLAAELLGSRLTLEQWQQALEIRRRTGSSLGQVLTRL CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH SYLSTPEYLSILAHLLGYPAVSELMGTGLLHRDESLSRQFDPEVMMRHLFYPLSWTDEHT HHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCCE LTVMVNDPLDWVVDELLYSWRPGLRIEKVLGTEQDITQLLSQDQGSRFSQEAVYKLMARL EEEEECCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC PEESASRVFTPSQIAVGYGLLLLFLLGLATAPWTTLTILVLLINLFYVASILFKLLLSLV CCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSADRFHQITDEEVAALDDRDLPIYTILVPVYKEPEVMPILIKSLSKLDYPHERLDVLIL CCCHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCEEEE LEENDRDTIEAARAAKPPRYVRLLLVPDSKPKTKPKACNYGLAFARGEYLTIYDAEDIPD EECCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCC PDQLKKAVIAFRKGDPSLVCVQAALNYFNRSENFLTRMFTLEYSYWFDYLLPGLETLRMP HHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCC IPLGGTSNHFRTDRLRELQGWDPFNVTEDADLGIRASQHGYTVGVINSTTYEEANCAVKN CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHH WIRQRSRWIKGYMQTWLVHNRNPLRSLRKLGLKNWLSYQFFIGGSFFTFLTSPIMWLLFI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHH YWLLTRAHWLQNLFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFYALLNPIYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH QLHSMAAYMALWQLFTKPFYWEKTIHGLSKFTHAKVQEAAHKAA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLQSLKSSLLRTGYLTRQQLAEAEEYREAASCSLPRALWSLRVMHPGKFVNLCRQILDRP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCC RLRDWLLKHSLDPELPWLIEPIDLVPVRFLPCGWLDPQTVVVATEEPGFPAIWQSVKHLC HHHHHHHHHCCCCCCCCEECCHHHCCHHEECCCCCCCCEEEEEECCCCCHHHHHHHHHHC PEAEKLWEIPATEKQILTVILERKLAAELLGSRLTLEQWQQALEIRRRTGSSLGQVLTRL CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH SYLSTPEYLSILAHLLGYPAVSELMGTGLLHRDESLSRQFDPEVMMRHLFYPLSWTDEHT HHCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHCCCCCCCCCCE LTVMVNDPLDWVVDELLYSWRPGLRIEKVLGTEQDITQLLSQDQGSRFSQEAVYKLMARL EEEEECCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC PEESASRVFTPSQIAVGYGLLLLFLLGLATAPWTTLTILVLLINLFYVASILFKLLLSLV CCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH GSADRFHQITDEEVAALDDRDLPIYTILVPVYKEPEVMPILIKSLSKLDYPHERLDVLIL CCCHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCEEEE LEENDRDTIEAARAAKPPRYVRLLLVPDSKPKTKPKACNYGLAFARGEYLTIYDAEDIPD EECCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCC PDQLKKAVIAFRKGDPSLVCVQAALNYFNRSENFLTRMFTLEYSYWFDYLLPGLETLRMP HHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCC IPLGGTSNHFRTDRLRELQGWDPFNVTEDADLGIRASQHGYTVGVINSTTYEEANCAVKN CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCHHHHHHHHH WIRQRSRWIKGYMQTWLVHNRNPLRSLRKLGLKNWLSYQFFIGGSFFTFLTSPIMWLLFI HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHH YWLLTRAHWLQNLFPSWLVYLGLFNLLVGNAIGIYLNLVAVFRRGYYDLAFYALLNPIYW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH QLHSMAAYMALWQLFTKPFYWEKTIHGLSKFTHAKVQEAAHKAA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9341680; 9384377 [H]