| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608173
Identifier: 86608173
GI number: 86608173
Start: 702940
End: 704877
Strand: Reverse
Name: 86608173
Synonym: CYB_0687
Alternate gene names: NA
Gene position: 704877-702940 (Counterclockwise)
Preceding gene: 86608174
Following gene: 86608172
Centisome position: 23.14
GC content: 61.51
Gene sequence:
>1938_bases GTGACGCAGAAGGCAAGACAGTGGGCTTTGTGGGTTGCCGGTTTGCTTTGGTGTTGCGGGCCGACGGCTGTCCACGCAGC GGAAGTCATTTCTCTGCAAAGGCTGGGCTACGACCGCTCGGTGCTGCTGCAAGGAGCTAACCCGCGTCTAGATATCGGGA TCCCTGCTCCCCTGAACGGTGTTGACCCTGAGGCCAGCTTTGTGCAGTTGCGCCTGGATCCCTCGCCGGTGCTCAAGCCC ACGTCCACGGTGCGGGTGCTGATCAACGAGGAGCTAATGGGCCTTTTTCTGGTGCGGGACCTGCGGCAGGAGCCGGTGGT GCGAGTGCCCATCCCCAGCTTGGCGCGGAGCGAGCGCTTCATCACCTTGTCGGTGCAGCCTTTCCTGAGCATCAGCGACG ATATTTGCGCCGACTTGAATACCGGCAATTTGCTGCTGACGGTAGGGCGGGATAGTTTCTTTGAGCTGGCGCCCCTCGTT CCTGATGCCACGGTGGCCGGTTTTCTGGGCCGGCTGTATCCTCAGGTTACTTTGGTAGTGCCGGCTGACCTCACTCCTGA AGCGGCGGAAGCAGCTCTGTGGCTGTACAGCCTCCTTTCTCACCTGTTTCCGCAAACGCCCATCCTGTGGAGCAACCGTC CGAAGCAGGGGGCACAGGTGATCTTAGAGCCGGCCAATTTCACCCCCCACTTGCAGCATCAAATTACCCCAGAGGGATCC CGCCTGCGAGTGGCCGCCCGCCGGGAAGCTATTCTTGCTCTCTATGAAGAATGGAAGCGGGCGGGGCTGGTCAGCCGCGG CATCCAGGTGACAAGGGTGGCGGATCTGGAGAGAGCGCTCAGGGCCAACCGCCTTAGCTTGCGGGAGTTGGGTATTGTGG ATCCGCTGCTGCGGGGGTTTGGCAGCCAGTCTTTGGTCTTCAACTTCAACCTGTCCCAATTGGGGGGACGACCGCGGGAT CTGGCGGCGCAACTGGATGTGATCATGAACCCGGTGGATGGCCGGGTGGGGGATCGTCTCACCGGCTACGTGTTCTTGAA TGGCGTTCTGTTGCGCACCTACAACCTAACCGGGCGCACCCAGCTCAACGAAACTGTGACCCTGCCCACCCGCCTGCTGC GCCGCTTTAATCAACTGGAGCTCCGCTTTGACTATGGCGCCAGCCCCGGTAATTGCCAGGGATCCCTGACCCCGCTGACT TTGCAAGTGCGCTCGGATAGCTCTGGCTTTATCTGGAGCGGCTACCAAGCCCCCACTGGCGAGCTGCAGGAGATCCCGGC GGTGCTTCGAGGATCCGGCCAAGTGTGGGTAGGGGATCCCCAACTGCTGCCGGCTGCCGCCTACCTGGTCGGTGCCCTCA GCCGGCTGGCTGCCCGACCCCTGCTGCCCACCCTTGAGGTTTTGCCCAAAGAGGAAGCCAACCTGGAGACGGGGAACTTT GCCTGGCAGGTGATCGTGGCTGGGCCAGATCAGGTGGAGCTTAATAGCCCCATCCGGCTGGGATCCCAGTTTGAAATCAT CAATCCCCTCAACCGGCAGGTGGCCTTGGCCGCTCAGCCTCAAGAAAACCTCGGCCTTTTGCAGTACTTTCTCCTGAAAG GTAAGCCGAACCTTTGGCTTTCCTGGTGGGGATCTGACCCGGCTTTGGCAGAGCGCCTCAGCCGCGGCCTTGCCGATCCG CGCACCCGCCTGGCCAACCAGCTACAGGGAAACGTGCTCACCGCCTATGCCGCTGCCCCCGATCTCACCCAAGTACAGAG CTGGGATCTCACGCCGGCAGGCTATCGAGTGCGCTACCCCGGTCGCTTCAGTTGGCAGCTTTTGTTGTGGCAATACCGCT ATTGGTTAGTGCTGCTGCTGGCCCTTTTGCTGGCAGTAGGAGCCTGGAATACCTACCAACGCTTGGCCCGCCGCCCTGAG TCGCCCACCCTTTCCTAG
Upstream 100 bases:
>100_bases GAAAGCTTACAGATTTCTGCATGTTGGGCAAACTTGGGTCAGGTGGGCCAAGGGGCTTGCCTGCCTCAAACAAGTTGGGG ATCAACAAGAGGGGGTCAAG
Downstream 100 bases:
>100_bases GGGGGTTGGCAGAGGACTTCCGGTTAAACCAGACTTGAGCCAAGCAAGGACTCCGTCCCACTTGCGCGAATAGGGTTTCC AGCCATGCTCCAGTCCCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 645; Mature: 644
Protein sequence:
>645_residues MTQKARQWALWVAGLLWCCGPTAVHAAEVISLQRLGYDRSVLLQGANPRLDIGIPAPLNGVDPEASFVQLRLDPSPVLKP TSTVRVLINEELMGLFLVRDLRQEPVVRVPIPSLARSERFITLSVQPFLSISDDICADLNTGNLLLTVGRDSFFELAPLV PDATVAGFLGRLYPQVTLVVPADLTPEAAEAALWLYSLLSHLFPQTPILWSNRPKQGAQVILEPANFTPHLQHQITPEGS RLRVAARREAILALYEEWKRAGLVSRGIQVTRVADLERALRANRLSLRELGIVDPLLRGFGSQSLVFNFNLSQLGGRPRD LAAQLDVIMNPVDGRVGDRLTGYVFLNGVLLRTYNLTGRTQLNETVTLPTRLLRRFNQLELRFDYGASPGNCQGSLTPLT LQVRSDSSGFIWSGYQAPTGELQEIPAVLRGSGQVWVGDPQLLPAAAYLVGALSRLAARPLLPTLEVLPKEEANLETGNF AWQVIVAGPDQVELNSPIRLGSQFEIINPLNRQVALAAQPQENLGLLQYFLLKGKPNLWLSWWGSDPALAERLSRGLADP RTRLANQLQGNVLTAYAAAPDLTQVQSWDLTPAGYRVRYPGRFSWQLLLWQYRYWLVLLLALLLAVGAWNTYQRLARRPE SPTLS
Sequences:
>Translated_645_residues MTQKARQWALWVAGLLWCCGPTAVHAAEVISLQRLGYDRSVLLQGANPRLDIGIPAPLNGVDPEASFVQLRLDPSPVLKP TSTVRVLINEELMGLFLVRDLRQEPVVRVPIPSLARSERFITLSVQPFLSISDDICADLNTGNLLLTVGRDSFFELAPLV PDATVAGFLGRLYPQVTLVVPADLTPEAAEAALWLYSLLSHLFPQTPILWSNRPKQGAQVILEPANFTPHLQHQITPEGS RLRVAARREAILALYEEWKRAGLVSRGIQVTRVADLERALRANRLSLRELGIVDPLLRGFGSQSLVFNFNLSQLGGRPRD LAAQLDVIMNPVDGRVGDRLTGYVFLNGVLLRTYNLTGRTQLNETVTLPTRLLRRFNQLELRFDYGASPGNCQGSLTPLT LQVRSDSSGFIWSGYQAPTGELQEIPAVLRGSGQVWVGDPQLLPAAAYLVGALSRLAARPLLPTLEVLPKEEANLETGNF AWQVIVAGPDQVELNSPIRLGSQFEIINPLNRQVALAAQPQENLGLLQYFLLKGKPNLWLSWWGSDPALAERLSRGLADP RTRLANQLQGNVLTAYAAAPDLTQVQSWDLTPAGYRVRYPGRFSWQLLLWQYRYWLVLLLALLLAVGAWNTYQRLARRPE SPTLS >Mature_644_residues TQKARQWALWVAGLLWCCGPTAVHAAEVISLQRLGYDRSVLLQGANPRLDIGIPAPLNGVDPEASFVQLRLDPSPVLKPT STVRVLINEELMGLFLVRDLRQEPVVRVPIPSLARSERFITLSVQPFLSISDDICADLNTGNLLLTVGRDSFFELAPLVP DATVAGFLGRLYPQVTLVVPADLTPEAAEAALWLYSLLSHLFPQTPILWSNRPKQGAQVILEPANFTPHLQHQITPEGSR LRVAARREAILALYEEWKRAGLVSRGIQVTRVADLERALRANRLSLRELGIVDPLLRGFGSQSLVFNFNLSQLGGRPRDL AAQLDVIMNPVDGRVGDRLTGYVFLNGVLLRTYNLTGRTQLNETVTLPTRLLRRFNQLELRFDYGASPGNCQGSLTPLTL QVRSDSSGFIWSGYQAPTGELQEIPAVLRGSGQVWVGDPQLLPAAAYLVGALSRLAARPLLPTLEVLPKEEANLETGNFA WQVIVAGPDQVELNSPIRLGSQFEIINPLNRQVALAAQPQENLGLLQYFLLKGKPNLWLSWWGSDPALAERLSRGLADPR TRLANQLQGNVLTAYAAAPDLTQVQSWDLTPAGYRVRYPGRFSWQLLLWQYRYWLVLLLALLLAVGAWNTYQRLARRPES PTLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71486; Mature: 71355
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKARQWALWVAGLLWCCGPTAVHAAEVISLQRLGYDRSVLLQGANPRLDIGIPAPLNG CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCC VDPEASFVQLRLDPSPVLKPTSTVRVLINEELMGLFLVRDLRQEPVVRVPIPSLARSERF CCCCCCEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEEECCCCHHCCCEE ITLSVQPFLSISDDICADLNTGNLLLTVGRDSFFELAPLVPDATVAGFLGRLYPQVTLVV EEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCEEEEEE PADLTPEAAEAALWLYSLLSHLFPQTPILWSNRPKQGAQVILEPANFTPHLQHQITPEGS CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCEEECCCCC RLRVAARREAILALYEEWKRAGLVSRGIQVTRVADLERALRANRLSLRELGIVDPLLRGF EEEEHHHHHHHHHHHHHHHHCCHHHCCEEEEEHHHHHHHHHHCCCHHHHHCCHHHHHHCC GSQSLVFNFNLSQLGGRPRDLAAQLDVIMNPVDGRVGDRLTGYVFLNGVLLRTYNLTGRT CCCEEEEEECHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECEEEEEEEECCCCC QLNETVTLPTRLLRRFNQLELRFDYGASPGNCQGSLTPLTLQVRSDSSGFIWSGYQAPTG CCCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCC ELQEIPAVLRGSGQVWVGDPQLLPAAAYLVGALSRLAARPLLPTLEVLPKEEANLETGNF HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCE AWQVIVAGPDQVELNSPIRLGSQFEIINPLNRQVALAAQPQENLGLLQYFLLKGKPNLWL EEEEEEECCCCEECCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE SWWGSDPALAERLSRGLADPRTRLANQLQGNVLTAYAAAPDLTQVQSWDLTPAGYRVRYP EEECCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCCCCCEEEECC GRFSWQLLLWQYRYWLVLLLALLLAVGAWNTYQRLARRPESPTLS CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure TQKARQWALWVAGLLWCCGPTAVHAAEVISLQRLGYDRSVLLQGANPRLDIGIPAPLNG CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCC VDPEASFVQLRLDPSPVLKPTSTVRVLINEELMGLFLVRDLRQEPVVRVPIPSLARSERF CCCCCCEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCEEEECCCCHHCCCEE ITLSVQPFLSISDDICADLNTGNLLLTVGRDSFFELAPLVPDATVAGFLGRLYPQVTLVV EEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHCCCCCCHHHHHHHHHHCCEEEEEE PADLTPEAAEAALWLYSLLSHLFPQTPILWSNRPKQGAQVILEPANFTPHLQHQITPEGS CCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCEEECCCCC RLRVAARREAILALYEEWKRAGLVSRGIQVTRVADLERALRANRLSLRELGIVDPLLRGF EEEEHHHHHHHHHHHHHHHHCCHHHCCEEEEEHHHHHHHHHHCCCHHHHHCCHHHHHHCC GSQSLVFNFNLSQLGGRPRDLAAQLDVIMNPVDGRVGDRLTGYVFLNGVLLRTYNLTGRT CCCEEEEEECHHHHCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECEEEEEEEECCCCC QLNETVTLPTRLLRRFNQLELRFDYGASPGNCQGSLTPLTLQVRSDSSGFIWSGYQAPTG CCCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCC ELQEIPAVLRGSGQVWVGDPQLLPAAAYLVGALSRLAARPLLPTLEVLPKEEANLETGNF HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCE AWQVIVAGPDQVELNSPIRLGSQFEIINPLNRQVALAAQPQENLGLLQYFLLKGKPNLWL EEEEEEECCCCEECCCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEE SWWGSDPALAERLSRGLADPRTRLANQLQGNVLTAYAAAPDLTQVQSWDLTPAGYRVRYP EEECCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCCCCCEEEECC GRFSWQLLLWQYRYWLVLLLALLLAVGAWNTYQRLARRPESPTLS CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA