| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608006
Identifier: 86608006
GI number: 86608006
Start: 526113
End: 527378
Strand: Direct
Name: 86608006
Synonym: CYB_0513
Alternate gene names: NA
Gene position: 526113-527378 (Clockwise)
Preceding gene: 86608005
Following gene: 86608007
Centisome position: 17.27
GC content: 58.45
Gene sequence:
>1266_bases ATGCTTGAACATCTCCATCTCGACCGCAACCGCAAGCTGATCTCCCTGTTTGGAGAGCCGGTTATCTTCCACTGCCATCA CTACAACCTCTTCCTGCAGCAGACTATTGAAGATCCCGACTGGATCGATGGAGTAGGGATCCTGCGCACGGCAGCCCAGG AGATCTTTTACAGTCTTCTGTACGGAGCTTTCAAGGCTCTTGGCATTCAGGAGACCCAAGAGCGCCTGGCAGTGGCAGCT CAGATCTTCAGTTTTTTAGGATTTGGGCGGCTGGCGTTTGAGGTGACACCTTCAGGCGGGGAAGTGCAGCTTACCCATTC TCACTATGCAGAAGGTTGGCTGAGCAAGTACGGAGAGCAGGTCAGCCGCACGCGCCCGATTGACCACTTGGCGGTGGGCT ATGTGGCGGCAGCTCTGGATGCCACGTTTGGCGAGCTGGGAAGCTACACGGCAGAAGAAACGGAGTGCATGGCCGTTACC CGTAAGGATCACTGCGTGATCCAGGCCACTCGGCTGCCGCGGCCCCAGTTGTTGACTCCCAGTCCAGGGATGGGCAAGTT GATCGAGCAGCCGCTCCAGTTCCCCCGGCCCACAACAGCAGTGGACTACGATGCGGTCAACGAAGCTCTGTGGGGCTTGC CTTTGGCCGGAGATGAGCGGGGGCAAATTCGCGCGTTTAACGTGTTGCTAACGCGCATGCCTGCCAACTACTACAACCGC ATTCAGTATCGCTTTTTACAGGAGCTGAAGGCGGTGCAGGCTGAGCTGATGGGGGTGGGGGAAGCTCTCATCCGCGAGTC GGGGCATGTTTGTGTCTTCTACACCTTTGGCAACATCATGGAATCGGTGGAGTGGGAAACCCTTGTGGGGCCGATGCTGG AGAAAGACACCGACTGGATCCACGGCGGCTATGCGGTGGCCAGCAGCCTGGGGTGGGGTCGCTGGCAGGCTTTGGAGGTG GTGAGTGGCCAGTCTTGCCGGGTGGCCATTGATGGCAACTACGAAGCCAACTACTTTTTGGCTTCCTACCCACGGGCAGA AGATCCCGCCTGCTATTTTGCTCAAGGGGCGGTGCCGGCGATGATGAATCTGGTCTACAACGGCAACATCCAGCAGAAGC CGGTTTTGGATCAAGTCTTCTACAACCGCCTCTTCCAGCGGGGTGGGCTCTTCCACGGCCAGGAGACCAAGGCCAGAGAG AAGGGGGATCCCTGGTGCGAGTTCTACGCCGCTCGCGTCAGCGGGACGGAGTCCTTGCGGATGTAG
Upstream 100 bases:
>100_bases GTTTGAGTAGTCGAGAATGGCTGGCGAGCTTTGCCTGAGGGCAGTTGCCGCGCTCAGGGGCCTGCTTTGAGCACTATCAT TCATCTCAACCCACTTGTCC
Downstream 100 bases:
>100_bases GGATCCATGCAGGTGCGTATCCTCAGGCGGCGGGAGTGTGGAGCGGGGTGGGCCACTGACCTGCTGCTGCCGCGCTGCCT TGCCTGGTCGGAGGTAGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE KGDPWCEFYAARVSGTESLRM
Sequences:
>Translated_421_residues MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE KGDPWCEFYAARVSGTESLRM >Mature_421_residues MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLLYGAFKALGIQETQERLAVAA QIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQVSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVT RKDHCVIQATRLPRPQLLTPSPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWIHGGYAVASSLGWGRWQALEV VSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPAMMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKARE KGDPWCEFYAARVSGTESLRM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47327; Mature: 47327
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLL CCCCEECCCCCHHHHHCCCCEEEEEECCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH YGAFKALGIQETQERLAVAAQIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQ HHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHH VSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVTRKDHCVIQATRLPRPQLLTP HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC SPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHHHHH IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHCCCCEE HGGYAVASSLGWGRWQALEVVSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPA CCCHHHHHCCCCCCCEEEHEECCCCEEEEECCCCCCCEEEEECCCCCCCCEEEECCCHHH MMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKAREKGDPWCEFYAARVSGTESLR HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCCCCHHCC M C >Mature Secondary Structure MLEHLHLDRNRKLISLFGEPVIFHCHHYNLFLQQTIEDPDWIDGVGILRTAAQEIFYSLL CCCCEECCCCCHHHHHCCCCEEEEEECCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHH YGAFKALGIQETQERLAVAAQIFSFLGFGRLAFEVTPSGGEVQLTHSHYAEGWLSKYGEQ HHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHH VSRTRPIDHLAVGYVAAALDATFGELGSYTAEETECMAVTRKDHCVIQATRLPRPQLLTP HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC SPGMGKLIEQPLQFPRPTTAVDYDAVNEALWGLPLAGDERGQIRAFNVLLTRMPANYYNR CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHCCHHHHHH IQYRFLQELKAVQAELMGVGEALIRESGHVCVFYTFGNIMESVEWETLVGPMLEKDTDWI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHCCCCEE HGGYAVASSLGWGRWQALEVVSGQSCRVAIDGNYEANYFLASYPRAEDPACYFAQGAVPA CCCHHHHHCCCCCCCEEEHEECCCCEEEEECCCCCCCEEEEECCCCCCCCEEEECCCHHH MMNLVYNGNIQQKPVLDQVFYNRLFQRGGLFHGQETKAREKGDPWCEFYAARVSGTESLR HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCCCCHHCC M C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA