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The map label for this gene is ydcR [C]

Identifier: 86607837

GI number: 86607837

Start: 358767

End: 360056

Strand: Reverse

Name: ydcR [C]

Synonym: CYB_0340

Alternate gene names: 86607837

Gene position: 360056-358767 (Counterclockwise)

Preceding gene: 86607838

Following gene: 86607836

Centisome position: 11.82

GC content: 61.63

Gene sequence:

>1290_bases
ATGACCCAGACCTCGTCCGCATCGGCACCGCGTAGCACTTCGCGGCCCTTGTTGCAAACCCTTTTTGCCCAACGGGCTCA
GGCTGTGATCCCTTCTCCTTTCGGGGCGGAGATCCCAGGGGCGGTGCCAGTGGTTACCAGTTTTACCTTTGGGCTGGCGG
ATCCGCGCCTGTTTCCCAAGGCCGACTTGGCGCGGGCCACGGCGGAGGTGTTGGCAGAGGATGGGGACAATGCCCTCAAT
TACGGCGGCACGTTTGCCGGGCTGATCGACGTGGTGCTGCAGTTGATGCGGGATAGAGGGGTAGAGGCCCAGCCGGAAAA
CCTACTGATCGGCTATGGCTCTGGGCAGATCCTCGGCCTGTTGCCTCAGGTCTTCGTGGAGCCGGGGGATGTAGTCATTG
TGGAAGGGCCCACCTTCATGGGGGCTGTCAGCCGTTTTGCGGCGGCAGGAGCGCGTCTGATCTCGATTCCGGTAGATGGG
GAAGGCATGGTGGTGGATCGCCTGGAAGAGGTGCTGCGCGATCTGGCTCGCCAAGGGATCCGCCCCCGATTTGTCTATAC
CATTCCCACCTTCCAAAACCCCAAAGGCTGCACCCTCTCTGGGCCACGGCGGCAGAAATTGGTGCAGTTGGCAGCTGAGT
ACGGTGTGGTGGTGGTGGAGGACGAGGCCTACTACGACCTGCGCTTTGCCGGGGATCCCTTGCCCAGTTTGGCTGCGCTG
GATCGGGAAGGCTGGGTTCTGCACGTGGGCACCTTCTCCAAGATTGTGGTGCCGGGAGTACGGGTGGGCTGGGCCTGTGG
TCACCCTGAGATCATCCGCCGCTTGGAGATGTTTCGCAGCGAGGGATCCCTGGGGCCCTTTCTGGGCCGGGTGGTGGCCC
GCTATTGCGGGGAGGGCCGTCTGCAAAGCCACATTCAACTCCTCACCCGTCGCTACCGAGAAAAGTGCCAGGTGATGCTG
GAGGCCATCGCTCAATATTTTCCGCCCGAAGTCAAGGTGGAGGCCCCTGGGGGTGGATTTTTCGTTTGGTGTGAGCTACC
CCCTTTCCTAAGCGCCAGCACCTTGTTGCAGGCTACCCGTGCCCTGGGGGTCACCTTCCTGCCGGGCACCCACTGCTTTG
CCGACGGCCAAGGAGACCATGCTCTGCGCCTGGCCTTCAGCTATCAACCCGAGGAGCGCATTGTCAGTGGGATCCAGACC
ATTGGGGAACAACTGTACAGACTGATACACTCTTGCGCCAGCGGTGCGGAGCAGCAAGGGAAGGAGCTCTCCAAAAGCAT
GGATCCTTGA

Upstream 100 bases:

>100_bases
TACCGGAGCTGGCGGCGGGTTTTGGGATCCCTACTCCTGGGCAGTTCTTTCTTGTTATCGTGGCAGGCATTGGCCTAAGG
TATTCTTTCTCTTGCTTGCC

Downstream 100 bases:

>100_bases
AGCCCAGAGCGCAGATTTCCCGCTCACCTGCCCCCCACAGCCTTGGCCACGCGCCGGAAAAATTGCCCAACGCCCTTCAC
CAGGTTAGGTGCAGCTTCTG

Product: aminotransferase, classes I and II

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MTQTSSASAPRSTSRPLLQTLFAQRAQAVIPSPFGAEIPGAVPVVTSFTFGLADPRLFPKADLARATAEVLAEDGDNALN
YGGTFAGLIDVVLQLMRDRGVEAQPENLLIGYGSGQILGLLPQVFVEPGDVVIVEGPTFMGAVSRFAAAGARLISIPVDG
EGMVVDRLEEVLRDLARQGIRPRFVYTIPTFQNPKGCTLSGPRRQKLVQLAAEYGVVVVEDEAYYDLRFAGDPLPSLAAL
DREGWVLHVGTFSKIVVPGVRVGWACGHPEIIRRLEMFRSEGSLGPFLGRVVARYCGEGRLQSHIQLLTRRYREKCQVML
EAIAQYFPPEVKVEAPGGGFFVWCELPPFLSASTLLQATRALGVTFLPGTHCFADGQGDHALRLAFSYQPEERIVSGIQT
IGEQLYRLIHSCASGAEQQGKELSKSMDP

Sequences:

>Translated_429_residues
MTQTSSASAPRSTSRPLLQTLFAQRAQAVIPSPFGAEIPGAVPVVTSFTFGLADPRLFPKADLARATAEVLAEDGDNALN
YGGTFAGLIDVVLQLMRDRGVEAQPENLLIGYGSGQILGLLPQVFVEPGDVVIVEGPTFMGAVSRFAAAGARLISIPVDG
EGMVVDRLEEVLRDLARQGIRPRFVYTIPTFQNPKGCTLSGPRRQKLVQLAAEYGVVVVEDEAYYDLRFAGDPLPSLAAL
DREGWVLHVGTFSKIVVPGVRVGWACGHPEIIRRLEMFRSEGSLGPFLGRVVARYCGEGRLQSHIQLLTRRYREKCQVML
EAIAQYFPPEVKVEAPGGGFFVWCELPPFLSASTLLQATRALGVTFLPGTHCFADGQGDHALRLAFSYQPEERIVSGIQT
IGEQLYRLIHSCASGAEQQGKELSKSMDP
>Mature_428_residues
TQTSSASAPRSTSRPLLQTLFAQRAQAVIPSPFGAEIPGAVPVVTSFTFGLADPRLFPKADLARATAEVLAEDGDNALNY
GGTFAGLIDVVLQLMRDRGVEAQPENLLIGYGSGQILGLLPQVFVEPGDVVIVEGPTFMGAVSRFAAAGARLISIPVDGE
GMVVDRLEEVLRDLARQGIRPRFVYTIPTFQNPKGCTLSGPRRQKLVQLAAEYGVVVVEDEAYYDLRFAGDPLPSLAALD
REGWVLHVGTFSKIVVPGVRVGWACGHPEIIRRLEMFRSEGSLGPFLGRVVARYCGEGRLQSHIQLLTRRYREKCQVMLE
AIAQYFPPEVKVEAPGGGFFVWCELPPFLSASTLLQATRALGVTFLPGTHCFADGQGDHALRLAFSYQPEERIVSGIQTI
GEQLYRLIHSCASGAEQQGKELSKSMDP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=393, Percent_Identity=23.6641221374046, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI33469970, Length=393, Percent_Identity=23.6641221374046, Blast_Score=133, Evalue=3e-31,
Organism=Escherichia coli, GI1787710, Length=368, Percent_Identity=31.5217391304348, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1790797, Length=371, Percent_Identity=27.2237196765499, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1788722, Length=310, Percent_Identity=26.1290322580645, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321236, Length=396, Percent_Identity=22.7272727272727, Blast_Score=111, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6321000, Length=250, Percent_Identity=29.2, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6321929, Length=203, Percent_Identity=26.1083743842365, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21356535, Length=320, Percent_Identity=27.5, Blast_Score=112, Evalue=7e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 46543; Mature: 46412

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTSSASAPRSTSRPLLQTLFAQRAQAVIPSPFGAEIPGAVPVVTSFTFGLADPRLFPK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
ADLARATAEVLAEDGDNALNYGGTFAGLIDVVLQLMRDRGVEAQPENLLIGYGSGQILGL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
LPQVFVEPGDVVIVEGPTFMGAVSRFAAAGARLISIPVDGEGMVVDRLEEVLRDLARQGI
HHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
RPRFVYTIPTFQNPKGCTLSGPRRQKLVQLAAEYGVVVVEDEAYYDLRFAGDPLPSLAAL
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCHHHHC
DREGWVLHVGTFSKIVVPGVRVGWACGHPEIIRRLEMFRSEGSLGPFLGRVVARYCGEGR
CCCCCEEEECCCHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH
LQSHIQLLTRRYREKCQVMLEAIAQYFPPEVKVEAPGGGFFVWCELPPFLSASTLLQATR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHH
ALGVTFLPGTHCFADGQGDHALRLAFSYQPEERIVSGIQTIGEQLYRLIHSCASGAEQQG
HCCEEECCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KELSKSMDP
HHHHHCCCC
>Mature Secondary Structure 
TQTSSASAPRSTSRPLLQTLFAQRAQAVIPSPFGAEIPGAVPVVTSFTFGLADPRLFPK
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
ADLARATAEVLAEDGDNALNYGGTFAGLIDVVLQLMRDRGVEAQPENLLIGYGSGQILGL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHH
LPQVFVEPGDVVIVEGPTFMGAVSRFAAAGARLISIPVDGEGMVVDRLEEVLRDLARQGI
HHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
RPRFVYTIPTFQNPKGCTLSGPRRQKLVQLAAEYGVVVVEDEAYYDLRFAGDPLPSLAAL
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCHHHHC
DREGWVLHVGTFSKIVVPGVRVGWACGHPEIIRRLEMFRSEGSLGPFLGRVVARYCGEGR
CCCCCEEEECCCHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCH
LQSHIQLLTRRYREKCQVMLEAIAQYFPPEVKVEAPGGGFFVWCELPPFLSASTLLQATR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHH
ALGVTFLPGTHCFADGQGDHALRLAFSYQPEERIVSGIQTIGEQLYRLIHSCASGAEQQG
HCCEEECCCCCEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
KELSKSMDP
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]