| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607789
Identifier: 86607789
GI number: 86607789
Start: 302622
End: 304169
Strand: Direct
Name: 86607789
Synonym: CYB_0290
Alternate gene names: NA
Gene position: 302622-304169 (Clockwise)
Preceding gene: 86607788
Following gene: 86607791
Centisome position: 9.93
GC content: 60.79
Gene sequence:
>1548_bases GTGTCTCAACCTGATGATGGGATGGCCGGAAACGTTGGGTTTGCCTCGGCTGGCGTTTTACCCCTAGCTATAATGCCGGT AATCCCCTTGAAGCGGATTCTGTCCATGTCTGAACCCCTGAATCCCCCTTTCCATTCCGAGCCCCAAAACGCCTCGCCCA GCTCAAAGGTTGCCTCAGATGCCGTCAATGGCGCTGCTGAGGGCCTGAACTGGGAGGAGCTGTGGCGGCAGCTGGAAGCG GGCTGGCAGGATCTACCCCGTCGCTCCGAAGAGACGGTGCAACAGACCCTGGCTCGCCTGCAACTGGAGTGGGGCGGGCT GTGCCGAGAGGCGCGGGATCGGCTGCAAAGCGCTCTGGAACAGTCGAGAACGGCGGGATCCCCAGAGCCCGTCCACCGAG AGCTGCAAGCGCTCTTGCCCCTGCTCAACCCCTGCCAATGGGAAGTGGTCATCGGCTCTTTGCGGCGGGCTGCAGATCGA GCTTGGGTGGCCAGCTTGCTGTATCACGGCTTGCAGGAAGCGGCCTATCCAGAGGCGGAAAGCCACGGGATCCCTTCTTG GGCTCGGACGCTGACCTCTGACCAACGCTCTGCTCTGGAGGCGATGAGTGCCCGTGCCTATGGCAACAGCCGCCTGCCTT TGGTGATGGACAAAAGCGGCCAGATTCAAGTAAAGGCCTCAGCCGCCTTGTTGGCCGCCTTGATCGCCATCGAGATCGGC AGTGTGGGTTCGGCAGGTGCCTTGTCCTTGCTGGGCACACCGGAGCTGCGCAAGCTCTTGAATGCCGAGGGCAAGCTGCG GCGAACTGGCTTAAAACAGGGACGAACTGCCCTCACAGAAGAAGAATGGCAAACGCTGCGCCGTTGGCTGGATCCCAAGG GATCCCCCCCCGACTGGTATCTCAATCTGACCCAAGTGGGGATCCAGACCACCCAAGTGGGGGACTATGCGGCACGGCGG CTGCGGGAGTTTTTCCAGAGTGAGTGGATTAAGCTCGTGATCCCCCCCTTGTATCACCTGGTCATCGATGCAGTGCGGCT ACTGACGGGAGAAGTGTTTCTCAGCGTGGGCACCACCCTGGAATCGGCTTTGGAATCGGCAGAGGCAGGGCGGCGACTGG AGTTGGTGCTGCAAGCCTTGCCCCAAGCGCGGAACATTCCCAGACCCAACCAGATCCAGGCTGCCATCCCTGCTGTGGTG GAAGCTGCCGAGAAACTCCTCAGACCTCTGCTGGCCCGCCAGTTGATGACCGTGGCGGACATCTTCGATCCGCCCATTCG CAACGAGAGCCTAAATGAATTGGGGCGGCAGCTCAACCTCTGGAACCCCTTCCAGTTTTTGCTCACCTGGAGCACGGCCG GCTGGCTGGAGGCCCTTCTGGATCAGATCAGCGAGTTGCAGCAGACCTACCCAGAAATGCCCCTGTGGGAGAGCTATCGC CAGGGCCTTGAAACGGCAGTGCAAGCTCCACGGGTGATGGATCAGGCGGAGGCTCTGCGTCTAACGGCCAAGAGTCTGGA TCCCAAGTTGGATCCCTTGGAAGATTGA
Upstream 100 bases:
>100_bases CCTGCATGATCGGGGTGGAGGTGGACAGCCGCACCAACCGCGTTATCGTCCTGTCGGTGATCGATAACCTGATGAAAGGG CAAGCCGGGCAGGCAGTGCA
Downstream 100 bases:
>100_bases GTAGATGATGCATAGGGAAGAAAATTTCCTACAGCATCCACAAAGTGAGGCTGGCAGGCTAGGTGGAATCTTTTCTACGC CAAAGACAAATCTGCACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEA GWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADR AWVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARR LREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVV EAAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED
Sequences:
>Translated_515_residues MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEA GWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADR AWVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARR LREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVV EAAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED >Mature_514_residues SQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASDAVNGAAEGLNWEELWRQLEAG WQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALEQSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRA WVASLLYHGLQEAAYPEAESHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIGS VGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWYLNLTQVGIQTTQVGDYAARRL REFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTLESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVE AAEKLLRPLLARQLMTVADIFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYRQ GLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57003; Mature: 56872
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASD CCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH AVNGAAEGLNWEELWRQLEAGWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALE HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRAWVASLLYHGLQEAAYPEAE HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH SHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHC SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWY CCCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCE LNLTQVGIQTTQVGDYAARRLREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTL EEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVEAAEKLLRPLLARQLMTVAD HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR HCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SQPDDGMAGNVGFASAGVLPLAIMPVIPLKRILSMSEPLNPPFHSEPQNASPSSKVASD CCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH AVNGAAEGLNWEELWRQLEAGWQDLPRRSEETVQQTLARLQLEWGGLCREARDRLQSALE HHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSRTAGSPEPVHRELQALLPLLNPCQWEVVIGSLRRAADRAWVASLLYHGLQEAAYPEAE HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH SHGIPSWARTLTSDQRSALEAMSARAYGNSRLPLVMDKSGQIQVKASAALLAALIAIEIG CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHC SVGSAGALSLLGTPELRKLLNAEGKLRRTGLKQGRTALTEEEWQTLRRWLDPKGSPPDWY CCCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHCHHHCCHHHHHHHHHHHCCCCCCCCCE LNLTQVGIQTTQVGDYAARRLREFFQSEWIKLVIPPLYHLVIDAVRLLTGEVFLSVGTTL EEHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESALESAEAGRRLELVLQALPQARNIPRPNQIQAAIPAVVEAAEKLLRPLLARQLMTVAD HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFDPPIRNESLNELGRQLNLWNPFQFLLTWSTAGWLEALLDQISELQQTYPEMPLWESYR HCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH QGLETAVQAPRVMDQAEALRLTAKSLDPKLDPLED HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA