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The map label for this gene is psbU

Identifier: 86606737

GI number: 86606737

Start: 2112928

End: 2113326

Strand: Reverse

Name: psbU

Synonym: CYA_2097

Alternate gene names: 86606737

Gene position: 2113326-2112928 (Counterclockwise)

Preceding gene: 86606739

Following gene: 86606736

Centisome position: 72.06

GC content: 57.14

Gene sequence:

>399_bases
ATGACTGCTTTCAACTCTGTCTGGAGAGGTGGTGCTATGCGTCGGCTCCTGTCCGCCTTGGTGTCTATCCTGTTGCTGCT
CTGTCTGTGCTTGGTCCCCTTGGGGATCCCGGCGGTGGCGGCGGAGCTGCCGCCGGTGAAACATCTTGACACTCCCATCG
ACGTGAACAACACCATCCTGCGCAACTACCGCCAGTTGCCCGGCTTCTATCCCACCCTGGCCCGCATCCTAGTAAAAAAT
GCTCCCTACAACAGCCTGGAGGACATGCTGCAGATCCCAGAATTGACGGAGCAACAGAAGGCCTTGATCAAGGCGAACGC
GGAGAACTTCGTGTTTGGGGAGTACCAAGAGGGAGCCAACCAACTGGAAAACCGGATCAACCAGGGATACTACGGCTGA

Upstream 100 bases:

>100_bases
TGTCGGGATCCAAATTTGAATCTGGGTCTCGATTCGGGGGAGCGGGGATGAGACACTAAATGGTCGGAGAATGTTAGCGA
CCTATCCCCTGAGCGTTGTC

Downstream 100 bases:

>100_bases
TCCTGGCAGGGTCTGCAGGGGAGAAAGCTTTCTGCTTCTCTGCAGCTTTTATGAAGCCTGCGTCGACATACCCCCCATCC
CTAAAGGGCGGGGATTCTTG

Product: photosystem II complex extrinsic protein precursor U

Products: NA

Alternate protein names: PS II complex 12 kDa extrinsic protein; PSII-U [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MTAFNSVWRGGAMRRLLSALVSILLLLCLCLVPLGIPAVAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILVKN
APYNSLEDMLQIPELTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG

Sequences:

>Translated_132_residues
MTAFNSVWRGGAMRRLLSALVSILLLLCLCLVPLGIPAVAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILVKN
APYNSLEDMLQIPELTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG
>Mature_131_residues
TAFNSVWRGGAMRRLLSALVSILLLLCLCLVPLGIPAVAAELPPVKHLDTPIDVNNTILRNYRQLPGFYPTLARILVKNA
PYNSLEDMLQIPELTEQQKALIKANAENFVFGEYQEGANQLENRINQGYYG

Specific function: Stabilizes the structure of photosystem II oxygen- evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010527 [H]

Pfam domain/function: PF06514 PsbU [H]

EC number: NA

Molecular weight: Translated: 14757; Mature: 14626

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFNSVWRGGAMRRLLSALVSILLLLCLCLVPLGIPAVAAELPPVKHLDTPIDVNNTIL
CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHCCCCCCCCHHHH
RNYRQLPGFYPTLARILVKNAPYNSLEDMLQIPELTEQQKALIKANAENFVFGEYQEGAN
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QLENRINQGYYG
HHHHHHHCCCCC
>Mature Secondary Structure 
TAFNSVWRGGAMRRLLSALVSILLLLCLCLVPLGIPAVAAELPPVKHLDTPIDVNNTIL
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHCCCCCCCCHHHH
RNYRQLPGFYPTLARILVKNAPYNSLEDMLQIPELTEQQKALIKANAENFVFGEYQEGAN
HHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QLENRINQGYYG
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA