| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606739
Identifier: 86606739
GI number: 86606739
Start: 2116444
End: 2117259
Strand: Reverse
Name: 86606739
Synonym: CYA_2099
Alternate gene names: NA
Gene position: 2117259-2116444 (Counterclockwise)
Preceding gene: 86606740
Following gene: 86606737
Centisome position: 72.19
GC content: 57.48
Gene sequence:
>816_bases ATGGACATGGCACCCCCACCTGGACTCTGCATTATGGATCACCCTACTTTTCTGGCCCAGCGCTACACGAAACTGTGCGA GGCTTATCTCTCGCTCAACGAAGCCTTCGCCAAATTAGATCACTCCCACAGCCGCCTGCAGAAGAGCTTCAGGAGGCTTC TGGTCACGGCCCGGAAAGCTTTGGATGAACTGCCTATCCTGCGGCAGGACGTCGAACAGTTACAACAGGGCGTCGAACAA AGGGATCGCTTGGTCCGTTCCCTGCGAGAAGAACTTCGGGAGAGAGAAGCTCGGCTGGGCGAGCTGATTGCCAACTATGA CCAAGTCTGTCACGAGCTGGAGTCCACCAAAGCAGATCTGTTGAGCGCTCAGGCGTTGATTGAAAAACTGGAAGCAGAGA ATGCCCAACTTTTGCAACAGTTGAGTCGCCTCACCAGTTTGGAGGAGGAATTGGCCAGCTTGACAGAACGGCTGAACCAA GCAGAGGCAGCCCGCCAAGCGTTGGAGGCCCGCAACCGTGAGCTGGAAGCAGCCCTGGGAGAGCGAGATCGGCAAGTGGA TAGCCTGCAAGCGCGGCTGGCGCAATTGGAGCGAGAGAACGCCTCGCTGAAGGCGCAACTGTCGCAGGTGGCTGACCTGC TTACCGAGGACTCGATCAATCTCCTGCAAGAAACCGAGAATGCCGTCAAGGCCGATGAGGAGGTGCTGCCCCTGGTGCTG GCCTCGCTGCCAGAGACTGAGCGCCTTATGCAAGAGGCCGAGCAACTCCTCTCCTCTTGCTCAGAGCTGGTCCAAGTGAA ACCACAAGCGGCTTGA
Upstream 100 bases:
>100_bases TTGCCCAGAGAGAGGAAAATCTTAAAGTAAAATTAATCCCACGGTTGTTGTAGCGAATAACCTCTTTTCCGGCTTGGGTC GATAGAATGAGCGGCATAAA
Downstream 100 bases:
>100_bases TCTGAGGGTTAGCCTTCCAGCCAGGGCTGACAACTGCACACCAGGTGACGATCCCCGTAGGCGTTGTCAATGCGGCTGAC GCTGGGCCAGAACTTGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 271; Mature: 271
Protein sequence:
>271_residues MDMAPPPGLCIMDHPTFLAQRYTKLCEAYLSLNEAFAKLDHSHSRLQKSFRRLLVTARKALDELPILRQDVEQLQQGVEQ RDRLVRSLREELREREARLGELIANYDQVCHELESTKADLLSAQALIEKLEAENAQLLQQLSRLTSLEEELASLTERLNQ AEAARQALEARNRELEAALGERDRQVDSLQARLAQLERENASLKAQLSQVADLLTEDSINLLQETENAVKADEEVLPLVL ASLPETERLMQEAEQLLSSCSELVQVKPQAA
Sequences:
>Translated_271_residues MDMAPPPGLCIMDHPTFLAQRYTKLCEAYLSLNEAFAKLDHSHSRLQKSFRRLLVTARKALDELPILRQDVEQLQQGVEQ RDRLVRSLREELREREARLGELIANYDQVCHELESTKADLLSAQALIEKLEAENAQLLQQLSRLTSLEEELASLTERLNQ AEAARQALEARNRELEAALGERDRQVDSLQARLAQLERENASLKAQLSQVADLLTEDSINLLQETENAVKADEEVLPLVL ASLPETERLMQEAEQLLSSCSELVQVKPQAA >Mature_271_residues MDMAPPPGLCIMDHPTFLAQRYTKLCEAYLSLNEAFAKLDHSHSRLQKSFRRLLVTARKALDELPILRQDVEQLQQGVEQ RDRLVRSLREELREREARLGELIANYDQVCHELESTKADLLSAQALIEKLEAENAQLLQQLSRLTSLEEELASLTERLNQ AEAARQALEARNRELEAALGERDRQVDSLQARLAQLERENASLKAQLSQVADLLTEDSINLLQETENAVKADEEVLPLVL ASLPETERLMQEAEQLLSSCSELVQVKPQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30668; Mature: 30668
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMAPPPGLCIMDHPTFLAQRYTKLCEAYLSLNEAFAKLDHSHSRLQKSFRRLLVTARKA CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LDELPILRQDVEQLQQGVEQRDRLVRSLREELREREARLGELIANYDQVCHELESTKADL HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAQALIEKLEAENAQLLQQLSRLTSLEEELASLTERLNQAEAARQALEARNRELEAALG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERDRQVDSLQARLAQLERENASLKAQLSQVADLLTEDSINLLQETENAVKADEEVLPLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLPETERLMQEAEQLLSSCSELVQVKPQAA HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MDMAPPPGLCIMDHPTFLAQRYTKLCEAYLSLNEAFAKLDHSHSRLQKSFRRLLVTARKA CCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH LDELPILRQDVEQLQQGVEQRDRLVRSLREELREREARLGELIANYDQVCHELESTKADL HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSAQALIEKLEAENAQLLQQLSRLTSLEEELASLTERLNQAEAARQALEARNRELEAALG HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERDRQVDSLQARLAQLERENASLKAQLSQVADLLTEDSINLLQETENAVKADEEVLPLVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASLPETERLMQEAEQLLSSCSELVQVKPQAA HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA