Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86606716

Identifier: 86606716

GI number: 86606716

Start: 2095714

End: 2096265

Strand: Reverse

Name: 86606716

Synonym: CYA_2076

Alternate gene names: NA

Gene position: 2096265-2095714 (Counterclockwise)

Preceding gene: 86606717

Following gene: 86606713

Centisome position: 71.48

GC content: 67.39

Gene sequence:

>552_bases
ATGGGCTGGCCTGAGGTCATCCAGCGCCTGGCAGGGCTGTTGCTGGTCACGGGGTTGGGGCTGTTTTTGTTCTGGCCACA
ACAGCTCCTGCTGCGCTACCGCAAGCCTTGGCAGGGCCCCCTCGCCTGGGTTGGGGAATGGCGCGGGTGGAGGGGCTTGG
CTCTGCGGGGCAGCCGTCGGGGTTGGGAATGGCGCTGCGGGTCCCTATACGTTCGCGGGCATTGGCCAGCCTGGGTGGGC
TGCCGTCTCTCCTTTGCCGACTGGCCTCGCTTCTGGCCCCTTCTGAGGCGGTTGGCCGAGGGGATCCAGATCCAGTCCTG
GCGAGGCGGCCTGGAAATCGGCTTTGCCGACCCGGCCTTGACGGGGCAGTGCCTAGGGCTTTTGGCAACCCTCCCCCCCT
CGCTGGCTTGCCACCTGCGCTTGACCTTCGCCCACACCGGCTGGCACGGACAGGGATCCCTGCTGCTTTGCTTTCGCGCC
TGGCGAGTGCTGGGGCCGGCCTTGGAATTGGCATGGCTCATCCTGCGCAGCAGCCGCTCGAGGATCCGATAG

Upstream 100 bases:

>100_bases
CGCATTGAATTTCAGGTGAAGATCACGCAGCAGGGGCGCTTGGTCATGCAGGGATCCTATACCTGTCAGGTGGTCGATTT
GCCCCGTTTTCTGGCTCGCT

Downstream 100 bases:

>100_bases
AACTCGTCAGCCCTCTCTTGGGCTCTTGCAGCAGCCCAACTACCAGTCATCATCGATGTCTAGAATTTTCCCGGCTCTGC
CATCGATTTTGACCTCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MGWPEVIQRLAGLLLVTGLGLFLFWPQQLLLRYRKPWQGPLAWVGEWRGWRGLALRGSRRGWEWRCGSLYVRGHWPAWVG
CRLSFADWPRFWPLLRRLAEGIQIQSWRGGLEIGFADPALTGQCLGLLATLPPSLACHLRLTFAHTGWHGQGSLLLCFRA
WRVLGPALELAWLILRSSRSRIR

Sequences:

>Translated_183_residues
MGWPEVIQRLAGLLLVTGLGLFLFWPQQLLLRYRKPWQGPLAWVGEWRGWRGLALRGSRRGWEWRCGSLYVRGHWPAWVG
CRLSFADWPRFWPLLRRLAEGIQIQSWRGGLEIGFADPALTGQCLGLLATLPPSLACHLRLTFAHTGWHGQGSLLLCFRA
WRVLGPALELAWLILRSSRSRIR
>Mature_182_residues
GWPEVIQRLAGLLLVTGLGLFLFWPQQLLLRYRKPWQGPLAWVGEWRGWRGLALRGSRRGWEWRCGSLYVRGHWPAWVGC
RLSFADWPRFWPLLRRLAEGIQIQSWRGGLEIGFADPALTGQCLGLLATLPPSLACHLRLTFAHTGWHGQGSLLLCFRAW
RVLGPALELAWLILRSSRSRIR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21043; Mature: 20912

Theoretical pI: Translated: 12.08; Mature: 12.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWPEVIQRLAGLLLVTGLGLFLFWPQQLLLRYRKPWQGPLAWVGEWRGWRGLALRGSRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEECCCC
GWEWRCGSLYVRGHWPAWVGCRLSFADWPRFWPLLRRLAEGIQIQSWRGGLEIGFADPAL
CCCEECCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCH
TGQCLGLLATLPPSLACHLRLTFAHTGWHGQGSLLLCFRAWRVLGPALELAWLILRSSRS
HHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RIR
CCC
>Mature Secondary Structure 
GWPEVIQRLAGLLLVTGLGLFLFWPQQLLLRYRKPWQGPLAWVGEWRGWRGLALRGSRR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEECCCC
GWEWRCGSLYVRGHWPAWVGCRLSFADWPRFWPLLRRLAEGIQIQSWRGGLEIGFADPAL
CCCEECCEEEEEECCCCEEEEEECHHCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCH
TGQCLGLLATLPPSLACHLRLTFAHTGWHGQGSLLLCFRAWRVLGPALELAWLILRSSRS
HHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RIR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA