| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606717
Identifier: 86606717
GI number: 86606717
Start: 2096252
End: 2096671
Strand: Reverse
Name: 86606717
Synonym: CYA_2077
Alternate gene names: NA
Gene position: 2096671-2096252 (Counterclockwise)
Preceding gene: 86606718
Following gene: 86606716
Centisome position: 71.49
GC content: 63.81
Gene sequence:
>420_bases ATGCCCACCCTCGCCTGTTGGGGCTCCCAGACCGTGAAACCTGTTCCTCTCGGCACCCGCGGCACCTGGCAAGGGATCCC CGGCCCCGAGCAAACGGCAGAGGCCCTGGGCAACCCCGGCGTGAGGGTGATCGGATCCCCGGCGCTGTTGGCGCTGATCG AGCGGTGCGGCCACAACACCTTGCAGCCCTTCTACGAGGGGGAAGAAGCCGTCGTCGGGATCCGCTTTGCCCTGGAACAC TGCTCGGCAGCCGTGGTCGGGGATCCTCTACACGTTCAGGTTGAGGTTGTGCAAGCGGTGGGAAGGCGCATTGAATTTCA GGTGAAGATCACGCAGCAGGGGCGCTTGGTCATGCAGGGATCCTATACCTGTCAGGTGGTCGATTTGCCCCGTTTTCTGG CTCGCTATGGGCTGGCCTGA
Upstream 100 bases:
>100_bases GCGGGCCCTGGTGCTGGTGGTTCTCGTCGGGATCCTGGTTCTCTGCCTCTTGCTTGGGCAGGGCTGGCGCCTGTGGCAGT CCAGGACTGCATCCCGCTAA
Downstream 100 bases:
>100_bases GGTCATCCAGCGCCTGGCAGGGCTGTTGCTGGTCACGGGGTTGGGGCTGTTTTTGTTCTGGCCACAACAGCTCCTGCTGC GCTACCGCAAGCCTTGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 138
Protein sequence:
>139_residues MPTLACWGSQTVKPVPLGTRGTWQGIPGPEQTAEALGNPGVRVIGSPALLALIERCGHNTLQPFYEGEEAVVGIRFALEH CSAAVVGDPLHVQVEVVQAVGRRIEFQVKITQQGRLVMQGSYTCQVVDLPRFLARYGLA
Sequences:
>Translated_139_residues MPTLACWGSQTVKPVPLGTRGTWQGIPGPEQTAEALGNPGVRVIGSPALLALIERCGHNTLQPFYEGEEAVVGIRFALEH CSAAVVGDPLHVQVEVVQAVGRRIEFQVKITQQGRLVMQGSYTCQVVDLPRFLARYGLA >Mature_138_residues PTLACWGSQTVKPVPLGTRGTWQGIPGPEQTAEALGNPGVRVIGSPALLALIERCGHNTLQPFYEGEEAVVGIRFALEHC SAAVVGDPLHVQVEVVQAVGRRIEFQVKITQQGRLVMQGSYTCQVVDLPRFLARYGLA
Specific function: Unknown
COG id: COG5496
COG function: function code R; Predicted thioesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14977; Mature: 14845
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLACWGSQTVKPVPLGTRGTWQGIPGPEQTAEALGNPGVRVIGSPALLALIERCGHNT CCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC LQPFYEGEEAVVGIRFALEHCSAAVVGDPLHVQVEVVQAVGRRIEFQVKITQQGRLVMQG CCCCCCCCCCEEHHHHHHHHCCCEEECCCEEEEHHHHHHHCCEEEEEEEECCCCEEEEEC SYTCQVVDLPRFLARYGLA CCEEEEECHHHHHHHHCCC >Mature Secondary Structure PTLACWGSQTVKPVPLGTRGTWQGIPGPEQTAEALGNPGVRVIGSPALLALIERCGHNT CCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC LQPFYEGEEAVVGIRFALEHCSAAVVGDPLHVQVEVVQAVGRRIEFQVKITQQGRLVMQG CCCCCCCCCCEEHHHHHHHHCCCEEECCCEEEEHHHHHHHCCEEEEEEEECCCCEEEEEC SYTCQVVDLPRFLARYGLA CCEEEEECHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA