| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is cbpA [C]
Identifier: 86606695
GI number: 86606695
Start: 2073485
End: 2074417
Strand: Reverse
Name: cbpA [C]
Synonym: CYA_2055
Alternate gene names: 86606695
Gene position: 2074417-2073485 (Counterclockwise)
Preceding gene: 86606696
Following gene: 86606694
Centisome position: 70.73
GC content: 65.7
Gene sequence:
>933_bases ATGGCTGCGAGCGATTTCAAGGACTACTACCAGATCCTGGGCGTCAGCCGAGATGCCTCTTTAGAGGAGATCAAGCGCGC CTATCGCAAGCTGGCTCGCCAGTATCACCCCGACGTCAACCCCGGCAACAAGGCGGCCGAGGAGCGCTTCAAGCAGATCA ACGAAGCCTACGAGGTGCTCTCGGATCCCGACAAGCGGCGGCGCTACGACCAGTTTGGCCAGTACTGGCAACGGGTGGGC AGCGGCGCGGCGGCGGGGCCGGGCATGGAGGGATTTGCCCAGTACGCCAGCTTCGAGGACTTCATCAACGAGCTGCTGGG CCGCATGGGATCCCGCCGCGGCGGCTTCCAGGGCTTCACCACGGGGTTTGGGCCGTTTGTCTCGGTGGATCTGCCAGGGC AAGACGTAGAAGCCACGCTGGGCCTCACCTGGGCAGAGGCCTTCCACGGCACCCAAAAGCGGCTGAGCGTGGATGGCGAA ACCCTCACCATCCGCATTCCTCCCGGCGCCAAACCGGGCAGCCGCATCCGCGTCAAGGGTAAAGGCCAATATAGCCCCTT TGGCGGGCCGAGGGGGGATCTCTACCTCACCCTGGAGCTGCCCCCGCACCCCTTCTTCCGCTTCGACGGCGACAACCTGC TCTGCGAGCTGCCCATCACCCCTGACGAGGCGGTTTTGGGCGGCACAGCGGAAGTCCCCACCCCCACCGGTCGGGTGCAA CTGAAGATCCCCGCCGGCGTCGATAGCGGCCAGACCCTGCGGCTGCGCGGCCAGGGCTGGCGGGATCCCCAAGGGCAGCG GGGCGACCTGCTGGTGCGGCTGAAGGTTGTCACGCCCAAATCCCTCTCCCCCACTGAGCGGGATCTCTACGAGAAGCTGC GGCAAAATCGGAGCTGGGATCCCCGCGCCTACTTGCAGGAGGTGAGGCTATGA
Upstream 100 bases:
>100_bases GACAGAGCTAAGTGTTTCTCCCTCGCTCTGGGTTTTCCGATTGCACCTCTAGCCTGAAGGTATCCTAAAAGCCTTAACCT GATTTCGTAGGGGTGAGCTT
Downstream 100 bases:
>100_bases GCTTGGCCATTGTGCGGGTAGAAGAACGGCTCTACACCTTTGAGCAGGCCAGTGAAGTAGCCGGGATCCCGACCCACCTG CTGGAGTGGCTGCTGTTGCA
Product: DnaJ family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MAASDFKDYYQILGVSRDASLEEIKRAYRKLARQYHPDVNPGNKAAEERFKQINEAYEVLSDPDKRRRYDQFGQYWQRVG SGAAAGPGMEGFAQYASFEDFINELLGRMGSRRGGFQGFTTGFGPFVSVDLPGQDVEATLGLTWAEAFHGTQKRLSVDGE TLTIRIPPGAKPGSRIRVKGKGQYSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAVLGGTAEVPTPTGRVQ LKIPAGVDSGQTLRLRGQGWRDPQGQRGDLLVRLKVVTPKSLSPTERDLYEKLRQNRSWDPRAYLQEVRL
Sequences:
>Translated_310_residues MAASDFKDYYQILGVSRDASLEEIKRAYRKLARQYHPDVNPGNKAAEERFKQINEAYEVLSDPDKRRRYDQFGQYWQRVG SGAAAGPGMEGFAQYASFEDFINELLGRMGSRRGGFQGFTTGFGPFVSVDLPGQDVEATLGLTWAEAFHGTQKRLSVDGE TLTIRIPPGAKPGSRIRVKGKGQYSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAVLGGTAEVPTPTGRVQ LKIPAGVDSGQTLRLRGQGWRDPQGQRGDLLVRLKVVTPKSLSPTERDLYEKLRQNRSWDPRAYLQEVRL >Mature_309_residues AASDFKDYYQILGVSRDASLEEIKRAYRKLARQYHPDVNPGNKAAEERFKQINEAYEVLSDPDKRRRYDQFGQYWQRVGS GAAAGPGMEGFAQYASFEDFINELLGRMGSRRGGFQGFTTGFGPFVSVDLPGQDVEATLGLTWAEAFHGTQKRLSVDGET LTIRIPPGAKPGSRIRVKGKGQYSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAVLGGTAEVPTPTGRVQL KIPAGVDSGQTLRLRGQGWRDPQGQRGDLLVRLKVVTPKSLSPTERDLYEKLRQNRSWDPRAYLQEVRL
Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI201862587, Length=344, Percent_Identity=34.8837209302326, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI201862518, Length=344, Percent_Identity=34.8837209302326, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI56549115, Length=344, Percent_Identity=34.8837209302326, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI5453690, Length=339, Percent_Identity=31.5634218289086, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI6631085, Length=332, Percent_Identity=33.433734939759, Blast_Score=128, Evalue=8e-30, Organism=Homo sapiens, GI205360838, Length=353, Percent_Identity=28.6118980169972, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI205360840, Length=352, Percent_Identity=28.4090909090909, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI39204547, Length=320, Percent_Identity=30.625, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI7706495, Length=326, Percent_Identity=26.3803680981595, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI4504511, Length=346, Percent_Identity=28.6127167630058, Blast_Score=92, Evalue=8e-19, Organism=Homo sapiens, GI194328760, Length=334, Percent_Identity=26.6467065868263, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI194328758, Length=334, Percent_Identity=26.6467065868263, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI194306642, Length=113, Percent_Identity=49.5575221238938, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI194306640, Length=113, Percent_Identity=49.5575221238938, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI47777312, Length=148, Percent_Identity=43.9189189189189, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=63.6363636363636, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=63.6363636363636, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI23503241, Length=104, Percent_Identity=49.0384615384615, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI27151736, Length=105, Percent_Identity=48.5714285714286, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI88501736, Length=105, Percent_Identity=48.5714285714286, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI22749377, Length=69, Percent_Identity=60.8695652173913, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI21553335, Length=127, Percent_Identity=39.3700787401575, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI56687498, Length=75, Percent_Identity=56, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI29126218, Length=64, Percent_Identity=54.6875, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI24308127, Length=68, Percent_Identity=51.4705882352941, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=48.4375, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI72534740, Length=79, Percent_Identity=48.1012658227848, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI5031741, Length=74, Percent_Identity=52.7027027027027, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9558755, Length=97, Percent_Identity=44.3298969072165, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI68077168, Length=66, Percent_Identity=59.0909090909091, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI68077166, Length=66, Percent_Identity=59.0909090909091, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI217035105, Length=73, Percent_Identity=50.6849315068493, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI21361912, Length=65, Percent_Identity=47.6923076923077, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787235, Length=306, Percent_Identity=35.9477124183007, Blast_Score=164, Evalue=8e-42, Organism=Escherichia coli, GI1786197, Length=138, Percent_Identity=42.0289855072464, Blast_Score=121, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17534355, Length=335, Percent_Identity=30.1492537313433, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17553098, Length=346, Percent_Identity=28.3236994219653, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17553096, Length=346, Percent_Identity=28.3236994219653, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17554644, Length=66, Percent_Identity=60.6060606060606, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI212645553, Length=68, Percent_Identity=50, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI115532476, Length=74, Percent_Identity=54.0540540540541, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI115532378, Length=68, Percent_Identity=50, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=58.7301587301587, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17554900, Length=69, Percent_Identity=49.2753623188406, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568643, Length=66, Percent_Identity=53.030303030303, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538236, Length=67, Percent_Identity=52.2388059701493, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563890, Length=64, Percent_Identity=53.125, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=343, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6323870, Length=67, Percent_Identity=53.7313432835821, Blast_Score=87, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6323119, Length=186, Percent_Identity=34.4086021505376, Blast_Score=86, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=56.0606060606061, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6324321, Length=142, Percent_Identity=34.5070422535211, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=53.6231884057971, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6320888, Length=105, Percent_Identity=39.0476190476191, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=89, Percent_Identity=47.1910112359551, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6324103, Length=67, Percent_Identity=53.7313432835821, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI85726398, Length=349, Percent_Identity=29.512893982808, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI18858081, Length=342, Percent_Identity=30.4093567251462, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI24658562, Length=334, Percent_Identity=29.940119760479, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI24658555, Length=334, Percent_Identity=29.940119760479, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI45552811, Length=265, Percent_Identity=33.2075471698113, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI45552813, Length=265, Percent_Identity=33.2075471698113, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI45549272, Length=265, Percent_Identity=33.2075471698113, Blast_Score=92, Evalue=6e-19, Organism=Drosophila melanogaster, GI24654066, Length=68, Percent_Identity=58.8235294117647, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24654070, Length=68, Percent_Identity=58.8235294117647, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24654068, Length=68, Percent_Identity=58.8235294117647, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24654072, Length=68, Percent_Identity=58.8235294117647, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=60.9375, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI20129487, Length=104, Percent_Identity=45.1923076923077, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24584014, Length=104, Percent_Identity=45.1923076923077, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646562, Length=78, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24646560, Length=78, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24646558, Length=78, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24646556, Length=78, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI21357547, Length=78, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI19920464, Length=68, Percent_Identity=47.0588235294118, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=49.2307692307692, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=50, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24668492, Length=68, Percent_Identity=51.4705882352941, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=50, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI17648033, Length=70, Percent_Identity=54.2857142857143, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584630, Length=70, Percent_Identity=54.2857142857143, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641698, Length=64, Percent_Identity=51.5625, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641696, Length=64, Percent_Identity=51.5625, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI21355911, Length=69, Percent_Identity=52.1739130434783, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24762799, Length=136, Percent_Identity=35.2941176470588, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24651436, Length=66, Percent_Identity=46.969696969697, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358273, Length=69, Percent_Identity=53.6231884057971, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21358311, Length=66, Percent_Identity=46.969696969697, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24651439, Length=66, Percent_Identity=46.969696969697, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI19922238, Length=71, Percent_Identity=46.4788732394366, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 34608; Mature: 34477
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASDFKDYYQILGVSRDASLEEIKRAYRKLARQYHPDVNPGNKAAEERFKQINEAYEVL CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SDPDKRRRYDQFGQYWQRVGSGAAAGPGMEGFAQYASFEDFINELLGRMGSRRGGFQGFT CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TGFGPFVSVDLPGQDVEATLGLTWAEAFHGTQKRLSVDGETLTIRIPPGAKPGSRIRVKG CCCCCEEEEECCCCCCHHHHCHHHHHHHCCCHHEEEECCCEEEEEECCCCCCCCEEEEEE KGQYSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAVLGGTAEVPTPTGRVQ CCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCEEE LKIPAGVDSGQTLRLRGQGWRDPQGQRGDLLVRLKVVTPKSLSPTERDLYEKLRQNRSWD EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCC PRAYLQEVRL HHHHHHHHCC >Mature Secondary Structure AASDFKDYYQILGVSRDASLEEIKRAYRKLARQYHPDVNPGNKAAEERFKQINEAYEVL CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH SDPDKRRRYDQFGQYWQRVGSGAAAGPGMEGFAQYASFEDFINELLGRMGSRRGGFQGFT CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC TGFGPFVSVDLPGQDVEATLGLTWAEAFHGTQKRLSVDGETLTIRIPPGAKPGSRIRVKG CCCCCEEEEECCCCCCHHHHCHHHHHHHCCCHHEEEECCCEEEEEECCCCCCCCEEEEEE KGQYSPFGGPRGDLYLTLELPPHPFFRFDGDNLLCELPITPDEAVLGGTAEVPTPTGRVQ CCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCEEE LKIPAGVDSGQTLRLRGQGWRDPQGQRGDLLVRLKVVTPKSLSPTERDLYEKLRQNRSWD EEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCC PRAYLQEVRL HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]