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The map label for this gene is ydcM [C]

Identifier: 86606674

GI number: 86606674

Start: 2051443

End: 2052723

Strand: Reverse

Name: ydcM [C]

Synonym: CYA_2034

Alternate gene names: 86606674

Gene position: 2052723-2051443 (Counterclockwise)

Preceding gene: 86606676

Following gene: 86606673

Centisome position: 69.99

GC content: 52.38

Gene sequence:

>1281_bases
ATGTTAGTCAGGGAAGCCAAACTCCTCAACGGGACGCCAAAGCAGTATCAAGCTTTGGACGAAGCCATCCGCACCGCACA
GTTTGTGCGCAACAAATGCCTGCGCCATTGGATGGACAATCGGGGGGTAGGGAAGAAGCATCTGTATGCTTTCTGCAAAG
ACTTGGCGAAGGAGTTCCCATTTGCGAATAAGCTCAACTCTGCTGCTCGGCAGGCGAGTGCGGAGCGAGCATGGCTATCG
ATTTCCAACTTCTACAGACGGTGCAAGCAGGGCGAAAAGAAGAAAGGCTATCCCCAGTTCAAGAAGCATTGCCGGTCTGT
GGAATACAAGCAATCGGGCTGGAAGTTATCTGATGATGGCCTGTCTATCACCTTCACGGACGGGTTTGGAGCAGGGACCT
TTGCGCTGTACTGCAATGGAGAAGCAAGACAGGATATCCTGAGCTCCAAAATCAACCGTGTGCGGGTGATCCGAAGAGCA
GATGGGTACTATGCCCAGTTCTGTCTGGATGTAGACCGCAAGGAGCAAGGACAATACACAGGCAATGTTATCGGTATTGA
TCTTGGGCTCAAGCATTTCTACACCGACCAGAACGGCAATACCGTGAATTGCCCGAAGTTTTTGCGCCGCAGCGAGAAGC
GGCTAAAAAGGCATCAACGCAAGTTGAGCAGGATGTTCGCAAAAGGGAGAAAACCGCAATCAAACAACTACCACAAACAG
AAGAACCGAGTAGGTAGGATTGACCTCAAAGTCCAGCGCCAGCGTAGAGACTGGGCGATTAAGCTAGCCCGGTGCGTAGT
GATGTCTAACGACATCGTGGTGTATGAGGACTTGCCGGTGAAGAACTTGGTCAAAAATCGTCATCTTGCCAAATCGATCC
AAGATGCTAGCTGGTCGCTATTCACTCACTGGCTAGACTACTACGGCAAGGTGTGGGGCAAGGCAATCGTAGCAGTGCCG
CCTCAATACACCACGCAGGATTGTAGTGGTTGTGGGCATAGAGTGGTTAAGACTCTGTCTACGCGAACTCATATTTGCCC
CAAGTGTCTGCTTGTGCTGGATAGGGATCAGAATGCAGCTCTGAATATCCTGAAGAAGGGGCTAAGCCTTTTGGGGCTCA
GCATCTTTAAGTTAAGCGTCTTAGGGTTGAAATGGCAAAACGGTACCTTAGGGCATAAGGGAACCGCTGCCCCCCGCCCC
CCTGTGTCCCCCCGTATACGGGGGGATGTAGGGGGGCCTGGGGGTCGGGAACGCTTGGGGAGAGATGCACCGCTGCTGTA
G

Upstream 100 bases:

>100_bases
AGAGGAGATTACCAAGCGGCGCCATAAAGCCCCGCCCTTTAGGTCAGGGATATAAGGCGCAGATTGTTTTATCTGATAAG
ACCCAGAATAAAATAGATTC

Downstream 100 bases:

>100_bases
AGGGGCAACCCGATACGGTAAGTGCGCCCGTAGAACCAAGAACAAGAATCCCCTGCCTTTAGGTAGGGGAGTATGTCAAG
GACTTCCCATTCCACGGCTG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MLVREAKLLNGTPKQYQALDEAIRTAQFVRNKCLRHWMDNRGVGKKHLYAFCKDLAKEFPFANKLNSAARQASAERAWLS
ISNFYRRCKQGEKKKGYPQFKKHCRSVEYKQSGWKLSDDGLSITFTDGFGAGTFALYCNGEARQDILSSKINRVRVIRRA
DGYYAQFCLDVDRKEQGQYTGNVIGIDLGLKHFYTDQNGNTVNCPKFLRRSEKRLKRHQRKLSRMFAKGRKPQSNNYHKQ
KNRVGRIDLKVQRQRRDWAIKLARCVVMSNDIVVYEDLPVKNLVKNRHLAKSIQDASWSLFTHWLDYYGKVWGKAIVAVP
PQYTTQDCSGCGHRVVKTLSTRTHICPKCLLVLDRDQNAALNILKKGLSLLGLSIFKLSVLGLKWQNGTLGHKGTAAPRP
PVSPRIRGDVGGPGGRERLGRDAPLL

Sequences:

>Translated_426_residues
MLVREAKLLNGTPKQYQALDEAIRTAQFVRNKCLRHWMDNRGVGKKHLYAFCKDLAKEFPFANKLNSAARQASAERAWLS
ISNFYRRCKQGEKKKGYPQFKKHCRSVEYKQSGWKLSDDGLSITFTDGFGAGTFALYCNGEARQDILSSKINRVRVIRRA
DGYYAQFCLDVDRKEQGQYTGNVIGIDLGLKHFYTDQNGNTVNCPKFLRRSEKRLKRHQRKLSRMFAKGRKPQSNNYHKQ
KNRVGRIDLKVQRQRRDWAIKLARCVVMSNDIVVYEDLPVKNLVKNRHLAKSIQDASWSLFTHWLDYYGKVWGKAIVAVP
PQYTTQDCSGCGHRVVKTLSTRTHICPKCLLVLDRDQNAALNILKKGLSLLGLSIFKLSVLGLKWQNGTLGHKGTAAPRP
PVSPRIRGDVGGPGGRERLGRDAPLL
>Mature_426_residues
MLVREAKLLNGTPKQYQALDEAIRTAQFVRNKCLRHWMDNRGVGKKHLYAFCKDLAKEFPFANKLNSAARQASAERAWLS
ISNFYRRCKQGEKKKGYPQFKKHCRSVEYKQSGWKLSDDGLSITFTDGFGAGTFALYCNGEARQDILSSKINRVRVIRRA
DGYYAQFCLDVDRKEQGQYTGNVIGIDLGLKHFYTDQNGNTVNCPKFLRRSEKRLKRHQRKLSRMFAKGRKPQSNNYHKQ
KNRVGRIDLKVQRQRRDWAIKLARCVVMSNDIVVYEDLPVKNLVKNRHLAKSIQDASWSLFTHWLDYYGKVWGKAIVAVP
PQYTTQDCSGCGHRVVKTLSTRTHICPKCLLVLDRDQNAALNILKKGLSLLGLSIFKLSVLGLKWQNGTLGHKGTAAPRP
PVSPRIRGDVGGPGGRERLGRDAPLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=316, Percent_Identity=27.8481012658228, Blast_Score=96, Evalue=7e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 48566; Mature: 48566

Theoretical pI: Translated: 10.78; Mature: 10.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVREAKLLNGTPKQYQALDEAIRTAQFVRNKCLRHWMDNRGVGKKHLYAFCKDLAKEFP
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
FANKLNSAARQASAERAWLSISNFYRRCKQGEKKKGYPQFKKHCRSVEYKQSGWKLSDDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHCCCEECCCC
LSITFTDGFGAGTFALYCNGEARQDILSSKINRVRVIRRADGYYAQFCLDVDRKEQGQYT
EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEHEECCCCCCCCCCC
GNVIGIDLGLKHFYTDQNGNTVNCPKFLRRSEKRLKRHQRKLSRMFAKGRKPQSNNYHKQ
CCEEEEEECHHHEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KNRVGRIDLKVQRQRRDWAIKLARCVVMSNDIVVYEDLPVKNLVKNRHLAKSIQDASWSL
HCCCCCEEEEEHHHHHHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FTHWLDYYGKVWGKAIVAVPPQYTTQDCSGCGHRVVKTLSTRTHICPKCLLVLDRDQNAA
HHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
LNILKKGLSLLGLSIFKLSVLGLKWQNGTLGHKGTAAPRPPVSPRIRGDVGGPGGRERLG
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
RDAPLL
CCCCCC
>Mature Secondary Structure
MLVREAKLLNGTPKQYQALDEAIRTAQFVRNKCLRHWMDNRGVGKKHLYAFCKDLAKEFP
CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
FANKLNSAARQASAERAWLSISNFYRRCKQGEKKKGYPQFKKHCRSVEYKQSGWKLSDDG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHCCCEECCCC
LSITFTDGFGAGTFALYCNGEARQDILSSKINRVRVIRRADGYYAQFCLDVDRKEQGQYT
EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEHEECCCCCCCCCCC
GNVIGIDLGLKHFYTDQNGNTVNCPKFLRRSEKRLKRHQRKLSRMFAKGRKPQSNNYHKQ
CCEEEEEECHHHEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
KNRVGRIDLKVQRQRRDWAIKLARCVVMSNDIVVYEDLPVKNLVKNRHLAKSIQDASWSL
HCCCCCEEEEEHHHHHHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
FTHWLDYYGKVWGKAIVAVPPQYTTQDCSGCGHRVVKTLSTRTHICPKCLLVLDRDQNAA
HHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
LNILKKGLSLLGLSIFKLSVLGLKWQNGTLGHKGTAAPRPPVSPRIRGDVGGPGGRERLG
HHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
RDAPLL
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]