| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606520
Identifier: 86606520
GI number: 86606520
Start: 1875934
End: 1876707
Strand: Reverse
Name: 86606520
Synonym: CYA_1870
Alternate gene names: NA
Gene position: 1876707-1875934 (Counterclockwise)
Preceding gene: 86606523
Following gene: 86606510
Centisome position: 63.99
GC content: 61.63
Gene sequence:
>774_bases ATGACAACCCAGAGAGAATGCCTGGCCCTGCACCTGGGAGAATGGCACGGGCTCTTTTCCGAGTATCGACCCACCGCCCA CGGCTGGGAGCTGGTGGGCCAAAAGCGCAGCCTCATCACCTTTGAGGCTTTGGATCGGGACGCAATCCGCCAAACCAATG CCTACTACCCCCTAGAGGGATCCCCTACCCCAACAAGCCGCCAGAGCTGGGTCTATCAAGATTTCTCGCCCGGCTTGCGC TTTTTCCCCGATGGCTCCTTTTCCAACGGGCGGCTGCAGCTGGCACCGTTTGGCGATTTTGCCGTCGAGCAGGGCTTTCT TTGGGGAGAGCGCAAGGCGCGGCTGGTGCAACAGTGGGATGCCCAAGGTCGTCTGGTAGAGGTAACCGCGATCCTGGAGC GGCGCGGCCAAGCTTTGGATCCCGTTGCAGACTGTTCACCCCTGAGCAGAGAGCAGCTGAGAGCCTGCCTCCAGGGGAGA TGGCGGGGGATCGCCCAGAGCTTTTCTGCTGCCGATAGCTTGCTCAGCGAAACTCATGTAGATCTCTCAGAGTGGGCCAG CCCTTGGGATCCCTTGCCGGGGGGGCTGTGGATGGGCGGGCCGGATCCCTTGCCCATCCCTACCGCCCACCGGGATCGCA GCTTTTCGGTGAGCCTGAGCTGGTTTCCGCAGTCGGAAGACTGCCATTGTCTCTTGCGTTTGATCCGGGACTACGATGCC CGCGGTGCTTGGCAAGGGGTTACGCTGATCCGGGCGCAGAAGGATCCTGGTTGA
Upstream 100 bases:
>100_bases AGCATAAACCCCAAAACCAGTAAAATGCCACCTCGGAACTTCCTCCCCATCGGCTCTGTCTTCCGCGTTGCGTCTCCCTA ATGTTACTTCACAGTGCTTC
Downstream 100 bases:
>100_bases GGAAGGCGCAAACCTGGGCAAACACCGTCTCCCGCTCGCAGTCCAAGGTGAGAACGTGGTCGGAGCGCTCCAGCCAATGC AGGGTCTTCTCGGCGGATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTTQRECLALHLGEWHGLFSEYRPTAHGWELVGQKRSLITFEALDRDAIRQTNAYYPLEGSPTPTSRQSWVYQDFSPGLR FFPDGSFSNGRLQLAPFGDFAVEQGFLWGERKARLVQQWDAQGRLVEVTAILERRGQALDPVADCSPLSREQLRACLQGR WRGIAQSFSAADSLLSETHVDLSEWASPWDPLPGGLWMGGPDPLPIPTAHRDRSFSVSLSWFPQSEDCHCLLRLIRDYDA RGAWQGVTLIRAQKDPG
Sequences:
>Translated_257_residues MTTQRECLALHLGEWHGLFSEYRPTAHGWELVGQKRSLITFEALDRDAIRQTNAYYPLEGSPTPTSRQSWVYQDFSPGLR FFPDGSFSNGRLQLAPFGDFAVEQGFLWGERKARLVQQWDAQGRLVEVTAILERRGQALDPVADCSPLSREQLRACLQGR WRGIAQSFSAADSLLSETHVDLSEWASPWDPLPGGLWMGGPDPLPIPTAHRDRSFSVSLSWFPQSEDCHCLLRLIRDYDA RGAWQGVTLIRAQKDPG >Mature_256_residues TTQRECLALHLGEWHGLFSEYRPTAHGWELVGQKRSLITFEALDRDAIRQTNAYYPLEGSPTPTSRQSWVYQDFSPGLRF FPDGSFSNGRLQLAPFGDFAVEQGFLWGERKARLVQQWDAQGRLVEVTAILERRGQALDPVADCSPLSREQLRACLQGRW RGIAQSFSAADSLLSETHVDLSEWASPWDPLPGGLWMGGPDPLPIPTAHRDRSFSVSLSWFPQSEDCHCLLRLIRDYDAR GAWQGVTLIRAQKDPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29012; Mature: 28881
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQRECLALHLGEWHGLFSEYRPTAHGWELVGQKRSLITFEALDRDAIRQTNAYYPLEG CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEHHHHCHHHHHHCCCCCCCCC SPTPTSRQSWVYQDFSPGLRFFPDGSFSNGRLQLAPFGDFAVEQGFLWGERKARLVQQWD CCCCCCCCCEEECCCCCCCEECCCCCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHC AQGRLVEVTAILERRGQALDPVADCSPLSREQLRACLQGRWRGIAQSFSAADSLLSETHV CCCCEEHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DLSEWASPWDPLPGGLWMGGPDPLPIPTAHRDRSFSVSLSWFPQSEDCHCLLRLIRDYDA CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC RGAWQGVTLIRAQKDPG CCCCCCEEEEEECCCCC >Mature Secondary Structure TTQRECLALHLGEWHGLFSEYRPTAHGWELVGQKRSLITFEALDRDAIRQTNAYYPLEG CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEHHHHCHHHHHHCCCCCCCCC SPTPTSRQSWVYQDFSPGLRFFPDGSFSNGRLQLAPFGDFAVEQGFLWGERKARLVQQWD CCCCCCCCCEEECCCCCCCEECCCCCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHC AQGRLVEVTAILERRGQALDPVADCSPLSREQLRACLQGRWRGIAQSFSAADSLLSETHV CCCCEEHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DLSEWASPWDPLPGGLWMGGPDPLPIPTAHRDRSFSVSLSWFPQSEDCHCLLRLIRDYDA CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC RGAWQGVTLIRAQKDPG CCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA